| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0623 |
|---|
| Symbol | |
|---|
| ID | 4958433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 669271 |
|---|
| End bp | 670758 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640179798 |
|---|
| Product | amino acid/peptide transporter |
|---|
| Protein accession | YP_001111988 |
|---|
| Protein GI | 134298492 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000100169 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACAA ATTCCAGTTC TCTAAAACAA CCACGTCCCT TTTACATGAT CTTTTTCTTA
GAGATGTGGG AACGCTTTGG TTTTTACGGA CTTCAGGCTG TATTGGCAAC CTTTTTTGTT
AAATCCTTGG GTATGAGTGA CGCAGAATCC TTTACCATTT TTGGTGCTTT CAGCGCTATG
GTGTATGGTT TTGTAGCTAT CGGTGGTTTT ATTGGCGACA AAGTTTTGGG TACCAAACGC
ACTATTGTAC TGGGTGCTTT TACCATGATG ATTGGTTATA TTTTAATTGG TATGGCAACC
CTAGATAAGA GCCTTGTTTA TATTGCTTTG GCCTTTGTAG CTGTTGGTAA CGGTTTGTTC
AAGGCAAACC CCTCCAGTTT ACTGTCAAAG CTCTATGAAA AAGATGACCC ACGATTGGAT
GGCGCCTTTA CCCTGTATTA CATGTCTGTA AACATAGGAT CTTTCATTTC CATGATCTTG
GTTCCTATTT TGGGCGGCAA GTTTGGTTTA AGTGTTGGTT TCTATGTCTG TGCCGCAGGA
TTAATGCTTT CTCTTGCTAG TTTCATCTTC TTCCGCCAGT TAGTTGAGGG AATTGATTCA
CCTGCGGGCC TGGCACCCAT CCATTACCGC AATTTTTCCC TGGTATTACT GGGTGAAGCA
GTTCTCATTG GGTTCTCTAC CTATATGCTA CAAAACCTAA CTGTGGCTCA CTGGCTTTTA
TTACTGGTTG GTATCGGCGT AATATCCATC TTTTTTAAAG AGATATTTAA GAGTCAGGGT
ATTGAACGTA GCAAAATGAT TGCCGCTGTA ATTTTGATGG TTCAAGCAGT TGTCTTCTTT
ACTCTGTACC AGCAAATGCC CACCTCCTTA AATTTCTTTG CCATTAAAAA CGTAGAACAC
TCAATTTTAG GGATTGCTGT TAGCAACCCA GAAACCTTCC AGGCCCTGAA TCCCTTCTGG
ATTGTGGTAG CCAGCCCACT TTTCGCTTAT CTGTATGCTT ACTTCGGTAA GCAGGGGCGC
GATTTGTCTA TGCCTGGTAA ATTTGCTTTG GGTATGGTAT TATGCGCAAT CAGTTTTTTA
ATCCTACCTC TGGGTACTAA ATTTGCGAAC TCCCAGGGTA TCGTTTCCGT TTGGTGGTTG
GTGGCCAGCT ATGGCTTCCA AAGTGTAGGA GAACTATTAA TTAGCGGCTT AGGCTTATCA
ATGGTGGCCA AGTTGGTTCC CCAACGTATG GTAGGCTTTG TAATGGGTGC TTGGTTCCTT
ACCACCGCAG CCTCCGGTGT TATTGGCGGC TGGGTTGCAA CGCTAACTGC AGCACCCAAA
GGTGTAACTG ATCCTCTACA AACCCTGCCC ATATATTCCA AGGTGTTCCT GCAAATTGGT
GAGGTTACCG CTGTGGTGGC TGTGATTATG ATTATAACCG TACCCATTCT CCGTCGTATG
ATTGAGGGTA ACTCACAGCA AAATAAAAAG GAACAACAAG CTGCCTAA
|
|---|
| Protein sequence | MSTNSSSLKQ PRPFYMIFFL EMWERFGFYG LQAVLATFFV KSLGMSDAES FTIFGAFSAM
VYGFVAIGGF IGDKVLGTKR TIVLGAFTMM IGYILIGMAT LDKSLVYIAL AFVAVGNGLF
KANPSSLLSK LYEKDDPRLD GAFTLYYMSV NIGSFISMIL VPILGGKFGL SVGFYVCAAG
LMLSLASFIF FRQLVEGIDS PAGLAPIHYR NFSLVLLGEA VLIGFSTYML QNLTVAHWLL
LLVGIGVISI FFKEIFKSQG IERSKMIAAV ILMVQAVVFF TLYQQMPTSL NFFAIKNVEH
SILGIAVSNP ETFQALNPFW IVVASPLFAY LYAYFGKQGR DLSMPGKFAL GMVLCAISFL
ILPLGTKFAN SQGIVSVWWL VASYGFQSVG ELLISGLGLS MVAKLVPQRM VGFVMGAWFL
TTAASGVIGG WVATLTAAPK GVTDPLQTLP IYSKVFLQIG EVTAVVAVIM IITVPILRRM
IEGNSQQNKK EQQAA
|
|---|
| |