| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0288 |
|---|
| Symbol | |
|---|
| ID | 4958209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 298047 |
|---|
| End bp | 299117 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640179454 |
|---|
| Product | 3-isopropylmalate dehydrogenase |
|---|
| Protein accession | YP_001111662 |
|---|
| Protein GI | 134298166 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAAG TAGCTTTGCT GCCCGGTGAT GGTATCGGGC CGGAAATTGT TCCCCAGGCT
GTACGGGTTT TACAAGCCAT CGGGGAGAAA TATAAGCGAG AATTTTCCTT CCAAACAGCT
CTCATCGGCG GTGCTGCCTA TGATGCCACC GGTCATCCCC TACCGGAAGA AACCCTGGCA
GTTTGCCGCA ACAGTGATGC TATTTTATTG GGGGCAGTGG GCGGGCCTAA GTGGGATAAC
CTGGAGCCCC AACTGCGGCC GGAGCGGGGA GCACTGTTGC CACTGAGAAA AAAATTGGGC
CTCTATGCCA ATGTTCGCCC TGCGTCGGTG AATTCAGCCC TGGCAGAAGC CTCCCCCTTA
AAGGAAGAAC TTGTTTCTGG CTTAGATATC TTAATTATCC GGGAATTAAC CGGGGGACTC
TACTTTGGCC AAAAACACCG GGAAGATATA CCCGGTGGTG GACAAAAGGC AGTGGAAACC
TTGGAATATA CCACTGAAGA AGTTGAGCGG GTAGCCCGTT TAGGCTTTGA AATGGCCAGC
AAGAGAAATA AAAAACTGAT GTCCGTGGAT AAGGCCAATG TTTTAGAAAG TTCCCGGTTG
TGGCGGGAAG TTGTGGAAGA AGTGGCAAAG GATTATCCGG ATGTTGAACT AAGCCATATG
TATGTGGATA ACTGTGCCAT GCAACTGGTG CGCTATCCCA AGCAGTTTGA CGTTATGGTT
ACAGAGAACA TGTTTGGAGA TATCCTAACG GATTTGGCCT CCCAGCTTAC GGGGTCCATC
GGTATGCTGC CTTCGGCTAG CTTAGGTGGA GAAGTGGCCC TGTATGAGCC CATTCATGGT
TCAGCCCCGG ATATTGCCGG TAAGAACCTA GCCAATCCCA TTGCTACCAT CCTTTCCGCA
GCCATGATGC TTAGAATATC CTTTGGTTTA GAGACGGAAG CTGCAGCCAT TGAGCAAGCT
GTGGCCAAGG TCCTGGATCA AGGTTACCGC ACCGGGGATA TCATGCAGCC CGGTAAGACA
AAGGTAGGAA CAGTGGAAGT GACCGATGCG ATAATAAAGG CTCTGGGGTA A
|
|---|
| Protein sequence | MYKVALLPGD GIGPEIVPQA VRVLQAIGEK YKREFSFQTA LIGGAAYDAT GHPLPEETLA
VCRNSDAILL GAVGGPKWDN LEPQLRPERG ALLPLRKKLG LYANVRPASV NSALAEASPL
KEELVSGLDI LIIRELTGGL YFGQKHREDI PGGGQKAVET LEYTTEEVER VARLGFEMAS
KRNKKLMSVD KANVLESSRL WREVVEEVAK DYPDVELSHM YVDNCAMQLV RYPKQFDVMV
TENMFGDILT DLASQLTGSI GMLPSASLGG EVALYEPIHG SAPDIAGKNL ANPIATILSA
AMMLRISFGL ETEAAAIEQA VAKVLDQGYR TGDIMQPGKT KVGTVEVTDA IIKALG
|
|---|
| |