Gene Dred_0253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0253 
Symbol 
ID4957454 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp254189 
End bp255379 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content50% 
IMG OID640179419 
Producttryptophan synthase subunit beta 
Protein accessionYP_001111627 
Protein GI134298131 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0133] Tryptophan synthase beta chain 
TIGRFAM ID[TIGR00263] tryptophan synthase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.208201 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACCGG ATCATAGAGG TTATTTTGGC CCTTACGGTG GTGCCTTCGT GCCAGAAACA 
CTGATGCCTG CACTGGAAGA ACTAATCCAG GCTTACGGGG CAGCCAGTGA GGATGAAGAA
TTTTTAAAGG AGGTAACATA TTATTTAAAT GATTATGTAG GACGGCCATC TCCTATTTAT
TTTGCCCGTG CCCTCAGTGA GGGGACCGGG GGAGCCAAGA TTTTTCTGAA GAGAGAGGAT
CTAAATCATA CCGGCGCCCA TAAAATTAAC AATACCATCG GACAACTGCT GCTGGCCCGG
CGGATGGGTA AAAAACGAAT CGTAGCAGAA ACCGGGGCGG GGCAGCATGG TGTGGCCACC
GCTACGGTTT CTGCCATGCT GGGTATGCAA TGTGTTGTCT ATATGGGTGA AGAAGACATC
CGACGCCAGG CCCTTAATGT ATTTCGTATG CGCTTACTGG GGGCAGAGGT GGTTAAGGTC
AGTTCTGGTA CTGGAACATT AAAGGATGCT ATGAATGAAG CCATGAGGGA CTGGGTTACA
AATGTAAGGA ATACTTTCTA TGTGATTGGT TCGGTGGCGG GACCACACCC TTATCCTAAA
ATGGTAAGGG ACTTCCAATC CATTATTGGT CGAGAAGCCC GGGAACAAAT GCTCAAAAAA
ACCGGCAGAC TGCCTGATTA TGTGGTGGCC TGTGTAGGTG GCGGTAGTAA TTCCATGGGT
ATTTTTTATC CATTCTTAGA AGATCAAGAA GTCCATTTAG TTGGGGTAGA AGCAGGGGGG
CTGGGGTTGT CTTCCGGGCA ACATGCAGCC CCTCTCACAG TTGGACGGCC TGGGGTTTTG
CATGGCTCCT ATAGTTATTT AATGCAGGAC TCCCACGGCC AAGTTCACTC GGTTTATTCC
ATATCGGCGG GGCTGGATTA TCCGGGGGTT GGTCCGGAGC ACAGCTACCT AAGGGATGCT
GGGAGAGTCC GCTACACGGT GGCCACCGAT AAAGAAGCCC TGGAGGCCTT CCATTTACTT
TGCCGAACCG AAGGAATCCT GCCAGCCCTG GAGAGTTCCC ATGCACTGGT GGAGGCCGTA
AAATTAGCCA AGGTACTGGA CAATAGCCAC AACATTCTGG TTTGTTTATC TGGGCGAGGA
GATAAAGATG TTCATACAGT TGCCGAGGGA ATGGGGGAAG AACTGGTATG A
 
Protein sequence
MQPDHRGYFG PYGGAFVPET LMPALEELIQ AYGAASEDEE FLKEVTYYLN DYVGRPSPIY 
FARALSEGTG GAKIFLKRED LNHTGAHKIN NTIGQLLLAR RMGKKRIVAE TGAGQHGVAT
ATVSAMLGMQ CVVYMGEEDI RRQALNVFRM RLLGAEVVKV SSGTGTLKDA MNEAMRDWVT
NVRNTFYVIG SVAGPHPYPK MVRDFQSIIG REAREQMLKK TGRLPDYVVA CVGGGSNSMG
IFYPFLEDQE VHLVGVEAGG LGLSSGQHAA PLTVGRPGVL HGSYSYLMQD SHGQVHSVYS
ISAGLDYPGV GPEHSYLRDA GRVRYTVATD KEALEAFHLL CRTEGILPAL ESSHALVEAV
KLAKVLDNSH NILVCLSGRG DKDVHTVAEG MGEELV