Gene Dred_0216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0216 
SymbolrplD 
ID4955645 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand+ 
Start bp232831 
End bp233451 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content46% 
IMG OID640179382 
Product50S ribosomal protein L4 
Protein accessionYP_001111590 
Protein GI134298094 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0088] Ribosomal protein L4 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00000320704 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTAAAG TAGCTTTATA TAACATCAAC GGCGAGCAAG TTGGCGAAGT GGAGCTTAAG 
GACGAAGTGT TCGGCATTGA GCCTCACGAA CATGTAATGC ATGAAGCAGT AAACATGCAG 
CTGGCCAACC AACGCCAAGG TACCCATGAT ACCAAAACTA GAGCAGAGGT ACGCGGTGGT 
GGACGTAAAC CCTGGCGCCA AAAGGGCACT GGCCGTGCCA GAGCAGGTAG CAGCAGATCA 
CCCATCTGGC GCAAAGGTGG CATTGTATTT GGGCCCCATC CACGCGATTA TGCAATATCT 
CTGCCTAAAA AAGTGCGTCG TCTGGCTTTA AAATCAGCTC TTTCCAGTAA AGTACTGGAT 
CAAAACATCA TTGTATTAGA CAGTCTGACC ATGGATGCTC CTAAAACCAA AGATATGGTT 
CGTATCCTAG GAAACCTAAA AGCTGATAAG GCTTTGGTTG TGACTGCTAC TCGTGATTTA 
AATGTTGAAA AATCTGCTAG AAACATTGAA GGTGTAAAAC CTTTAAAAGC CGATGGAGTC 
AATGTTTATG ACTTGTTAAA ATACACTAAG CTGGTCATCA CCAAAGACGC CGTTGCTAAG 
ATCGAGGAGG TGCTGGCGTA A
 
Protein sequence
MPKVALYNIN GEQVGEVELK DEVFGIEPHE HVMHEAVNMQ LANQRQGTHD TKTRAEVRGG 
GRKPWRQKGT GRARAGSSRS PIWRKGGIVF GPHPRDYAIS LPKKVRRLAL KSALSSKVLD 
QNIIVLDSLT MDAPKTKDMV RILGNLKADK ALVVTATRDL NVEKSARNIE GVKPLKADGV 
NVYDLLKYTK LVITKDAVAK IEEVLA