| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0172 |
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| Symbol | |
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| ID | 4955753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 179819 |
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| End bp | 180778 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640179325 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001111546 |
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| Protein GI | 134298050 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000224205 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAAATAG GTTCCGTTAG GTTACCAAAT CAGGTGATTG CGGCTCCCAT GGCCGGGGTA
ACAGATAGGG CCTATCGAAT TCTTGCTAGA GAGCAAGGAT GTGGACTTGC TGTTACAGAA
ATGATTAGTG ATTTAGCGTT ACTTTATGCC AATCCCAGGA CTTACAGAAT GTTGGATTTC
AGGGGAGAAA CAGTACCACT AAGCGTTCAG ATATTTGGTT CAAACCCTGA ATCCATGGGC
AAAGCCGCAG CCATTGTTGT GGAAAGGGGG GCAACGATTG TTGATATTAA TATGGGTTGC
CCCACACCTA AAATTGTAAA AAACAACGAA GGCAGTGCAC TGATGAAGAC CCCACAATTG
GCTGCCAAAA TTGTGGAGGC GGTGGTAAAG TCCGTACCTG CCGTGCCAGT TACCGTAAAA
ATTCGTAAGG GCTGGGATGA GCAATCGGTA AATGCTGTTG AATTTGCGAG GTTAGTGGAG
GCCGCAGGGG CTTCGGCTGT GGCAGTGCAT GGGCGTACCC GAAGCCAATT TTATAGTGGT
AAGGCCGACT GGGAAAGCAT TCGAAAAGTT AAAGAAGCTT TAAAAATACC TGTTATTGGG
AACGGGGATA TTTGGTGTGC CCGGGATGCT GCTAAGATGT TAGAGTTGAC TGGTTGCGAT
GGTGTAATGG TAGGACGAGG GGCAATGGGA AACCCATGGA TCTTCCGAGA AATTGTCTAT
TATCTAAAGA CCGGAATGGA ACTGCCTTGT CCCAGTGCAC AGGAAAGGGT AGAAACTGCA
ATTCGTCATT TACAGCTCAT GGTGGAGTCT AAGGGCGAGG AGGTAGCGGT TTTTGAAATG
AGAAAACACG CTGCCTGGTA CACTAAGGGT ATGCGGGGAG CTGCCCGGAT AAGGGAGACC
ATTAACAAGT CCCAAAGTAA AAAAGAGATT GAGGATATAC TGAGAAGTCT CCTGGATTAA
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| Protein sequence | MQIGSVRLPN QVIAAPMAGV TDRAYRILAR EQGCGLAVTE MISDLALLYA NPRTYRMLDF
RGETVPLSVQ IFGSNPESMG KAAAIVVERG ATIVDINMGC PTPKIVKNNE GSALMKTPQL
AAKIVEAVVK SVPAVPVTVK IRKGWDEQSV NAVEFARLVE AAGASAVAVH GRTRSQFYSG
KADWESIRKV KEALKIPVIG NGDIWCARDA AKMLELTGCD GVMVGRGAMG NPWIFREIVY
YLKTGMELPC PSAQERVETA IRHLQLMVES KGEEVAVFEM RKHAAWYTKG MRGAARIRET
INKSQSKKEI EDILRSLLD
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