Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dred_0111 |
Symbol | |
ID | 4955907 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum reducens MI-1 |
Kingdom | Bacteria |
Replicon accession | NC_009253 |
Strand | + |
Start bp | 115731 |
End bp | 119240 |
Gene Length | 3510 bp |
Protein Length | 1169 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640179265 |
Product | transcription-repair coupling factor |
Protein accession | YP_001111486 |
Protein GI | 134297990 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00148726 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGGAT TATTACGGCC ACTAGAATCC ACAACTGAAT ATCAACACTT GCTTCAAGGA TTAGAAAAGG GCTTTAGGCA ACAAATGGTC TTTGGTCTAT CTGGTTCCCA GCGGAGCTAT TTATTTGCAG GGCTGGCCCA TGGCTGGCAA TCTGTTCTTA TTGTGACGCC GGGAGAGACC GAAGCGGGCA CCCTGGCGGA TGATTTAGCC ACCCTATTAC CAGAGGTTTC TGTGCAGCCC TTCCCGGTAT GGCAACTTTT GCCTTATCAA GTATTGGCCC ATAGTAATGA AGTTCTTGCC CAACGACTAC GGGTGTTGGA GAAACTTTCC ACAGGGAAAC CCACGGTGGT GGTTACTTCT GTGGATGCTC TCCTGAGAAG ATTAACTCCA CCAGAGGTTT TTCGTTGTGC GAAGGTAAAA CTGTCTCTGG GACAACAGGT AGACCTGGAA AAATTGCGGT TTGAGCTGGT TGAATTAGGC TACACAAGGG TAGACCTGGT GGAGGGAAGA GGACAATTTT CCAGCCGAGG TGGAATTTTA GACATTTACC CCATGTCGGA AGCCTTGCCT GTACGGATTG AATTTTTTGA TGACGAAGTG GACTCCATTC GTCACTTCGA GGTTGATAAT CAACGTAGTT TAGATAAATT AAAGGAGATC AACATTTCTC CTTGCAGAGA GTTGGTAGTA ACGCCCGCAG GGTGGCAGCG GTGTGAAGAA AATTATAGTT TAGAGTTTAA AAATCAACTT AAGAAATTAC AGCGTTCCGG TTCGGTGGAT GCAGTGCATC AGCTCTCTTC CCAGGGGGCC ATGTTGTTGG AACAAATTCG GCGTAGAGTA CCCTTTGATG GGATGGAACA ACTTTTGTAT TACTTCTATC CGGAACCGAT TACGCTTTTA GATTATTTCA CTGCAGCCCC TCTGTTGTTG GTAGATGACC CCATACGTTT TAAAGAAGTG GCAGAAACCA TTCTAAAAGA GAGAAACGAA ACATATACGG ATTTGTTAGG CAAGGGTAAG GTTTTGCCCG GTTATTTTAG CAGTTATCTG GAGTGGCGGC AACTGTTGGC CTCCATAGAA CGCCAGCAGA CCATTTTCTG TTCCTTTTTG CCCAGAAACC CGCAATACCT GAGACCACAA AACGTTGTGA ATTTTCCAGC CAAGGCTATG CACAGCTTCT TGGGACATGC TGAGGTTTTG GCTGATGAAA TTCGACATTG GCGCCGCAGG GGCTATGCCA TTACACTACT GGTTTCTTCT GAAGAAAGGG CAGCCAATTT ACTAAAAACA CTAAAGGATA GCAAAATAGA TGCTTTCCGG GTTAAACAGT TGGATCAGGA AGTGCGAGAA GGAAATGTCG TTATAACTGT GGGTCAAATG GCCAATGGTT TTGAACTAAT TTCTGCCCGT CTCGTGGTTA TTACAGATGC AGAAATATTT GGCCAGCGGA AGAAAGCCCG GAAACAAAGA TCGCGTCCTG ATGCTAAGAT GGAACCCCTG GCAGATTTGA AGGCGGGGGA TTATGTTGTT CACGTAAACC ATGGTATTGG GCGTTACCTG GGGGTTATTA CCCTTGATAT TGGAGCGTTG CAAAAGGATT ACCTGCAGCT TCAATACGCT GGTGAAGATA AACTCTATGT GCCAACAGAT CAAGTGGGTA TGCTGCAGAA ATACCTTGGG GCCGAATCCG ATCACCCCAA ACTATCCCGT CTGGGAGGCA CTGAATGGTC CAAGGCCAAG GCAAAGGTCC GGGAAGCGGT AAAAGATATG GCCGATGAAC TCCTGGCTCT CTACGCTTCC CGCCAGACTG TCAGAGGTCA TGCTTTTTCC AAAGATATGC CCTGGCAGGC AGAGTTTGAG GCGTTGTTTC CCTATGAAGA AACACCGGAC CAACTACGGG CCATTGGTGA AGTAAAACAG GACATGGAAA AAGTAAGACC CATGGATCGT CTTCTCTGTG GGGACGTAGG ATACGGAAAA ACGGAGGTAG CCCTAAGGGC AGCCTTTAAG GCAGTGATGG ATAACAAACA GGTGGCAGTA CTGGTTCCCA CCACCATTTT AGCCCAGCAG CACTACAACA CCTTTCGGGA ACGCTTTGCC AATTACCCCA TTCGCATAGA AATGTTATCC CGTTTCCGTA CAGCTAAAGA ACAGCGTCAG GTATTGGCGG GGCTTGCCAC CGGTGAGGTG GATATTGTTG TGGGTACCCA TCGATTGGTA CAAAATGATA TTGTATTTAA GGACCTGGGC CTCCTGGTTG TAGACGAAGA ACAACGTTTT GGAGTAAGCC ATAAGGAACG GCTGAAACAA ATTCGCAAAA ATGTTGATGT TTTAACCCTT TCTGCCACAC CCATTCCCCG CACCTTGCAT ATGTCTTTGG TGGGGGTGCG GGACACTAGC CTTTTGGAGA CACCACCTGA GGAACGTTTC CCGGTCCAGA CTTATGTTTT AGAAGAAGAC CCTGTGTTAA TTCGGGAGGC TATAAAAAGG GAACTTAACC GGGGAGGCCA AGTTTATTTT GTTCACAATC GGGTCATGGA CCTGGATCGA CTGGCTGGGT GGTTGCAAAA CCTGGTGCCC GAAGCCCGGA TTGGTATGGC TCACGGTCAA ATGAAGGAAG ATGAACTGGA ACAAATTATG ATCGAGTTTA TGGATGGAGA ATATGATGTT TTGGTTTGTA CCACCATTGT TGAGACTGGC CTGGATATAT CCAATGTAAA TACTCTCATT GTTAAGGATG CTGATCATTT TGGGCTTTCA CAGCTATATC AACTAAGGGG GAGGGTTGGC AGAACCAACC GCTTGGCCTA TGCCTATTTC CTCTTTAGAA GGGATAAGGT ACTGACGGAG ATTAGTGAAC GAAGGTTATC TGCCATTCGA GAATTTACTG AATTTGGCTC TGGTTATAAG ATTGCCATGC GAGATCTGGA GATTCGTGGG GCAGGGAACA TTTTAGGGGC ACAACAGCAC GGGCATATTG CGGAAGTGGG TTTTGATTTG TATTGCCGTC TGCTGGAAGA GGCTGTGCAG GAGGCCCGGG GGGAAAAGGT TGAAGAGGTG GTTGAAACCT CGGTGGAAAT ACCGGTGGAG GCCTACGTGC CGGATACCTA TGTGCCGGAT GGTAACCAAA AGGTCGAACT TTACCGTCGT TTAGCAGCCA TGAGGGATTT AGTGGAGATA TCCGACCTAG AGGAAGAACT GGTGGACCGT TACGGCGACT TACCCGAAAG TGTTCGTTGC CTGTTACAGG TAACCAAGCT GAAAATCATG GGTCGTGGAC TGAAGGTTAA AAGTATTAGC CGCAGCCAGG GGAGTTTTCG GATACTGTTT GTACCAGAGG CCCCTTTAGA TGGTGAGAAA CTGGTGAGTA TCAGTGAGAA ATACAAGAAC AATGTAAAGT TTCATACCTC CTCCGAAGGT TTTGAGATAA AGCTGATAAC TAAGGATAAG GGTGATGTTT CCCTTAGAAA ATTAGAACAG TTGGAGAGTT TTATGGGCCG GCTGAAATAA
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Protein sequence | MKGLLRPLES TTEYQHLLQG LEKGFRQQMV FGLSGSQRSY LFAGLAHGWQ SVLIVTPGET EAGTLADDLA TLLPEVSVQP FPVWQLLPYQ VLAHSNEVLA QRLRVLEKLS TGKPTVVVTS VDALLRRLTP PEVFRCAKVK LSLGQQVDLE KLRFELVELG YTRVDLVEGR GQFSSRGGIL DIYPMSEALP VRIEFFDDEV DSIRHFEVDN QRSLDKLKEI NISPCRELVV TPAGWQRCEE NYSLEFKNQL KKLQRSGSVD AVHQLSSQGA MLLEQIRRRV PFDGMEQLLY YFYPEPITLL DYFTAAPLLL VDDPIRFKEV AETILKERNE TYTDLLGKGK VLPGYFSSYL EWRQLLASIE RQQTIFCSFL PRNPQYLRPQ NVVNFPAKAM HSFLGHAEVL ADEIRHWRRR GYAITLLVSS EERAANLLKT LKDSKIDAFR VKQLDQEVRE GNVVITVGQM ANGFELISAR LVVITDAEIF GQRKKARKQR SRPDAKMEPL ADLKAGDYVV HVNHGIGRYL GVITLDIGAL QKDYLQLQYA GEDKLYVPTD QVGMLQKYLG AESDHPKLSR LGGTEWSKAK AKVREAVKDM ADELLALYAS RQTVRGHAFS KDMPWQAEFE ALFPYEETPD QLRAIGEVKQ DMEKVRPMDR LLCGDVGYGK TEVALRAAFK AVMDNKQVAV LVPTTILAQQ HYNTFRERFA NYPIRIEMLS RFRTAKEQRQ VLAGLATGEV DIVVGTHRLV QNDIVFKDLG LLVVDEEQRF GVSHKERLKQ IRKNVDVLTL SATPIPRTLH MSLVGVRDTS LLETPPEERF PVQTYVLEED PVLIREAIKR ELNRGGQVYF VHNRVMDLDR LAGWLQNLVP EARIGMAHGQ MKEDELEQIM IEFMDGEYDV LVCTTIVETG LDISNVNTLI VKDADHFGLS QLYQLRGRVG RTNRLAYAYF LFRRDKVLTE ISERRLSAIR EFTEFGSGYK IAMRDLEIRG AGNILGAQQH GHIAEVGFDL YCRLLEEAVQ EARGEKVEEV VETSVEIPVE AYVPDTYVPD GNQKVELYRR LAAMRDLVEI SDLEEELVDR YGDLPESVRC LLQVTKLKIM GRGLKVKSIS RSQGSFRILF VPEAPLDGEK LVSISEKYKN NVKFHTSSEG FEIKLITKDK GDVSLRKLEQ LESFMGRLK
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