| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0108 |
|---|
| Symbol | |
|---|
| ID | 4956685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 113676 |
|---|
| End bp | 114308 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640179262 |
|---|
| Product | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 |
|---|
| Protein accession | YP_001111483 |
|---|
| Protein GI | 134297987 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1825] Ribosomal protein L25 (general stress protein Ctc) |
|---|
| TIGRFAM ID | [TIGR00731] ribosomal protein L25, Ctc-form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000360091 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATA CAGCTTTAAA TGCTAATTTA AGGAAAACGG CTACAAAATC CATTGTAAAA
GAAATTAGAA ATAACGGGGG TATTCCAGGG GTGGTTTATG GTAAACATGT GGGTTCCATG
GCTATTTCTG TGGATGCTAA AGATTTAAAG AATATTTTAG GTTCTGTAAC AGGGCGGAAC
ACACTGATTA ATATGAACAT AAATGGTAGC AAACAGACCG TCATGGTTAA GAGTCTACAA
ATGGATCCCA TGCATCAAAA TATACGACAT GTGGATTTTC AACAGGTATC GGAAAATACG
AAAATACGGA CTGTTATTCC TGTTCAATTA GTAGGGACCC CAAAGGGCGT AGCAATGGGA
GGCGTTATTC AACATGACCT GCGCAGTGCA GAAATAGAGT GCCTTCCCAA TCGAATTCCG
GAGGCTATTC AAGTGGATAT CAGTGGGCTT GAGATTGGTG ATACCCTATC TGTAAGTGAT
TTAAATTTAC CGCCAGGTGT TAAGATTTTA GATCACCCCC ATACGACTGT TGTTGGCTTA
GCAACCATTA AGGCGCCTGA ACCAGCAGGT CAGCCAGAGG TACCGCCAGA ACCTGCGGAG
GAAGCTAAGG CAAAAACCAT TGAAAAAGAG TAA
|
|---|
| Protein sequence | MADTALNANL RKTATKSIVK EIRNNGGIPG VVYGKHVGSM AISVDAKDLK NILGSVTGRN
TLINMNINGS KQTVMVKSLQ MDPMHQNIRH VDFQQVSENT KIRTVIPVQL VGTPKGVAMG
GVIQHDLRSA EIECLPNRIP EAIQVDISGL EIGDTLSVSD LNLPPGVKIL DHPHTTVVGL
ATIKAPEPAG QPEVPPEPAE EAKAKTIEKE
|
|---|
| |