Gene Dred_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0004 
SymbolrecF 
ID4956144 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp3256 
End bp4371 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content39% 
IMG OID640179147 
Productrecombination protein F 
Protein accessionYP_001111381 
Protein GI134297885 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.106759 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGGGTAA AAAAGTTATC TCTAAGGAAT TTCCGTAACT ACAAAGAAGC TCAATTTATC 
CCTCATCCGT CCATAAATAT CATTACCGGT CCAAATGCCC AAGGGAAGAC AAACTTACTA
GAAGCTATTT ATTATAGTTT AAGGGGTTGC TCCTTCAGGG CTGAAAAAGA CAGGGATGTT
ACAAACTGGG AAAGTAACCA TACTGTTATC AATACAGAAG TTAATTTATC TTCTAGATTG
ATTAAACTGC AATGGAAAAT CCAAGAGGGT AGTAAAAAGT TATCCCTCAA CGGAGTAGAG
AGACCTCGCT CGGAGTTGGA TCTTTTTGGA GTTGTATTGT TTTGTCCAGA AGATTTATCT
TTAATAAAAG GTTCACCCCA GGAAAGAAGG CACTTTTTAG ACTATGAAGT AGGAACTTTA
AGCCCTGGCT ATAGCCAATT ATGGCGTCAG TATGCCAAGA TTTTAAGCCA AAGAAATAGT
CTGTTGAAAG AAATCAGGGA CCATCGATCA AAGCAAGAGG TATTAGAAGT TTGGGATGAA
CAACTATACA GGTATGGCGC TAAAGTAATT TATCTACGCT TACAAGTCCT AAAAAAATTA
ATTCCCATTG CCAGAAAAAC ACATTTTGGA CTCACTGGAG GAACTGAAGA ACTGCAAGCT
AAGTACCTGT CTTCACTGGT ATTAGAGCCT GGTTTAAGCG AAGGACAAAT TTATCAAGTT
TTTTCATCAT CCTCGAAAAA AATTCGCCAA ATGGAACTTA AAAGGTGTCA AACCCTTTTA
GGCCCTCACC GGGATGATTT ATCCCTAGCC ATAAATGGCG TTGAGGCAAA AACTTTTGGT
TCCCAGGGGC AGCAAAGAAC CGTGACATTA TCACTAAAAT TATCGCAGCT TGATTTGTGG
TACCATGAGT TTGGCGAATA TCCGGTATTA CTACTGGACG ATGTCTTATT CGAATTAGAC
CGAAGTAGGC AGAATATGCT GATTGATAAA ATTTTAAACA AGGTACAAAC CTTTATAACA
ACTAGTTTTA CAGGTGGTAT TGAAGAAACC ATAAAGGGTG CCGGACTCCT CTGGCAAGTA
AATGCTGGTA GTTTAACGCA AAAGGAGGAA TTTTGA
 
Protein sequence
MRVKKLSLRN FRNYKEAQFI PHPSINIITG PNAQGKTNLL EAIYYSLRGC SFRAEKDRDV 
TNWESNHTVI NTEVNLSSRL IKLQWKIQEG SKKLSLNGVE RPRSELDLFG VVLFCPEDLS
LIKGSPQERR HFLDYEVGTL SPGYSQLWRQ YAKILSQRNS LLKEIRDHRS KQEVLEVWDE
QLYRYGAKVI YLRLQVLKKL IPIARKTHFG LTGGTEELQA KYLSSLVLEP GLSEGQIYQV
FSSSSKKIRQ MELKRCQTLL GPHRDDLSLA INGVEAKTFG SQGQQRTVTL SLKLSQLDLW
YHEFGEYPVL LLDDVLFELD RSRQNMLIDK ILNKVQTFIT TSFTGGIEET IKGAGLLWQV
NAGSLTQKEE F