| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_pSN254_0021 |
|---|
| Symbol | |
|---|
| ID | 4929375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009140 |
|---|
| Strand | + |
|---|
| Start bp | 13482 |
|---|
| End bp | 14009 |
|---|
| Gene Length | 528 bp |
|---|
| Protein Length | 175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642572325 |
|---|
| Product | nuclease domain-containing protein |
|---|
| Protein accession | YP_001101900 |
|---|
| Protein GI | 134047145 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1525] Micrococcal nuclease (thermonuclease) homologs |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0439144 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.0000334812 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTTAG GTTTTGTGAA AAATACGGGG GTTTCAGCGT TCCTGGTAGC CATGCTGGTG
GTGGCCCCTC AGGTATGGGC AGAAACCTTT ACTGCGAAGG TTGTGGGGGT GTCTGACGGT
GATACGGTCA AGGTCCTGAC TGAACAAAGC TGTGACTCCG GGAAAGATTG CCGGAGCGGC
AAAATCCAGT ACCGGGTAAG GCTGGCGGAA ATCGACACCC CAGAGAAGAA ACAACCCTAC
GGCTCAAAGG CGAAACAGGC GTTGTCCGAT CTGGTGTTTG GTCGAATGAT TAAAGTCGAG
CAAATCGACA AAGACCGTTA TGGCCGTCTG GTCGCCAACC TTTATGTCGA TGGCAAATGG
GTCAATGCCG AAATGGTCCG TTCTGGGAGT GCGTGGGTGT ACCGGCAGTA CGCCAAAACA
CCGGAGCTGT TCAAGCTGGA GGCCGAAGCC AAAGCCGATA AGCGAGGTCT CTGGGCATTA
CCGGAATCGG AGAGAACTCC CCCTTGGGAG TGGCGAAGAA AGCACTAA
|
|---|
| Protein sequence | MRLGFVKNTG VSAFLVAMLV VAPQVWAETF TAKVVGVSDG DTVKVLTEQS CDSGKDCRSG
KIQYRVRLAE IDTPEKKQPY GSKAKQALSD LVFGRMIKVE QIDKDRYGRL VANLYVDGKW
VNAEMVRSGS AWVYRQYAKT PELFKLEAEA KADKRGLWAL PESERTPPWE WRRKH
|
|---|
| |