| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_1640 |
|---|
| Symbol | |
|---|
| ID | 4928889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | + |
|---|
| Start bp | 1577153 |
|---|
| End bp | 1578811 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640167146 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001098151 |
|---|
| Protein GI | 134046666 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.160134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCTTT TTGACAGGAT TCAAAATAAA GATTCTAAAC CCAATGTCGC TAAAAAGAAT
AATAGTTCTG AAAATGTATC TGGAACCCCA AATTTATTCG ATAAAACTGA AAAAGTTGAA
CAAAAAAAAA CTGAAATAAA AATGGGATTT TCAGTATCGG ATAAAGTGAA AAAACAACCT
GTTGAAACAT TTGAAAGAGA GTCTACTGGA TCTGTACTCG ATAAATACTT CGTAAAAGTT
GATGATATTG ATTTTGACGT AATTATTGAA AAAGAAGATG GCATTACGAA ATACAAAATT
CCGGAAATTA CCTTAATGAA TACTGCTCTT GCAAAATTTT CTGATTTAGA TATTAAAACA
ATAAAATCTG AACTTTCAGA ATCTACAATT CAAAAAATCG GACAAATTCA AGGCTACATT
AAAAACTATT CTGAAAAAAA TAACTTACAT TTAAGAGATA TTGAAATACT CCACCTATCA
CATTATTTTT ATTTAATAAT TGGAAAATTA GGACTTTTAG AAATTCCATT AAATGATAGT
AAATTAGAAG AAGTAATGGT AAATGGGGTT GAATTACCTG CATTTGTATT CCATAGAAAA
TATCAGATGT GTGAAACGAA TGTTCGACTA GATAGGCACG AAGCTACCAG GGTTGTTGAA
AGTATTGCAT ATCTTGCAGG TAGGAGCATT GATTCGAGAA CTCCGATGCT TGATGCATTT
TTACCCGACG GAAGTAGGGT TAACGCCACT ATGGGAGATG TCACATTAAA AGGAAACACC
ATTACAATTC ATAAATTTAG TGAAGACCCA TTAACTATTG TTGATTTGAT TAATTTCGGA
ACCTTTGATT TAGAACTCGC TGCATTTCTT TGGCAGGCTG TCGAAGGATA CTTTGGTGCA
AAACCTGCAA ACACCTTGAT TGTTGGGGGA ACAGGTTCGG GTAAAACCAC TACATTAAAT
GTAGTTTCAA TGTTTTCGAT GTATACTGAT AGGATTGTAA CTATTGAAGA TACTCCAGAG
TTACAGGTTC CACTAACACA CTTGATAAAA ATGATTACAA GACCTGGAAG GCCGGGGGTC
CAAGGCTATG AAATTACGAT GGATGATTTA ATTAAGAATT CCTTAAGGAT GAGACCAGAT
AGGATCTTTG TAGGGGAAGT TAGGGGTAGT GAAGCTCATT CATTGCTTGT TGCAATGAAC
ACTGGACATG ATGGATGTTC TGGAACCCTG CACGCAAACA GTGCTGATGA GGCAATTATC
AGATTGGTAA ATCCGCCAAT GAACGTTCCA AAAGTTATGA TGTCTTCAAT CGACTTTATT
ATAAACCAGC AACGTATCAA ACGTAATAAA AAAACTGTTA GAAGAATCCT CGGTGTTGTT
GAAATCGGAG GAAGTGGGGA AAATATTACA AAAACTGAAC TCTTTAAGTA CGATGGAATA
AGCGACAGTG TTGTAAAAAC TGGGATTTGT ATGTGGGAAG AAGATGTATG CCAGATTGCA
GGTATTACTC GAGATGAATT AATGGATGAT CGGATTAATA GAAAGAAAGT ACTAAAATAC
ATGGTGAACA ATAATATTAG TGATATTAAA AAAGTTGGCG ATGTAATTAA ACAATATCAG
GAAAATCCAG AAAATGTATT GAAACATATG TTGGAATGA
|
|---|
| Protein sequence | MGLFDRIQNK DSKPNVAKKN NSSENVSGTP NLFDKTEKVE QKKTEIKMGF SVSDKVKKQP
VETFERESTG SVLDKYFVKV DDIDFDVIIE KEDGITKYKI PEITLMNTAL AKFSDLDIKT
IKSELSESTI QKIGQIQGYI KNYSEKNNLH LRDIEILHLS HYFYLIIGKL GLLEIPLNDS
KLEEVMVNGV ELPAFVFHRK YQMCETNVRL DRHEATRVVE SIAYLAGRSI DSRTPMLDAF
LPDGSRVNAT MGDVTLKGNT ITIHKFSEDP LTIVDLINFG TFDLELAAFL WQAVEGYFGA
KPANTLIVGG TGSGKTTTLN VVSMFSMYTD RIVTIEDTPE LQVPLTHLIK MITRPGRPGV
QGYEITMDDL IKNSLRMRPD RIFVGEVRGS EAHSLLVAMN TGHDGCSGTL HANSADEAII
RLVNPPMNVP KVMMSSIDFI INQQRIKRNK KTVRRILGVV EIGGSGENIT KTELFKYDGI
SDSVVKTGIC MWEEDVCQIA GITRDELMDD RINRKKVLKY MVNNNISDIK KVGDVIKQYQ
ENPENVLKHM LE
|
|---|
| |