Gene MmarC5_0988 details

Gene Information

• Locus tag: MmarC5_0988
• Symbol: radB
• ID: 4929101
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C5
• Kingdom: Archaea
• Replicon accession: NC_009135
• Strand: -
• Start bp: 956959
• End bp: 957609
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 640166486
• Product: DNA repair and recombination protein RadB
• Protein accession: YP_001097509
• Protein GI: 134046023
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0468] RecA/RadA recombinase
• TIGRFAM ID: [TIGR02237] DNA repair and recombination protein RadB

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0377224
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTGAAG AACTTTTAAA TGGAAATATC GAGAAAAAGA CGATAACTCA AATCTATGGG 
CCTCCTGGTG TCGGAAAAAC AAACATATGC ATACTTTCAA TGTTAAAAGC AATTGAAAAT 
GGCAAAAATG TGGTTTACAT CGATACAGAG GGCAGTTTAT CCATTGAAAG AATAAAACAG 
CTTTCAGAAC AGGATAGTGA TGAATTACTT AAAAGTATAA TAATCTACGA GCCTTCGTCA 
TTTGAGGAGC AGTCTGAAGC TTTAGAAAAG ATATTTTTTC TTGAAAATAT CGGTCTTATA 
GTTATTGATG GTATTGTTTC GCTTTATAGG TTGGAACTCT GTGACAACAT CAATGAAAAT 
ACTAAATTAA ATAGGATGCT CGGAAAGCAG ATCTCAAACC TGCTAAAAGT TGCTAGAATG 
AAAAATTCTG GAATATTAAT CACTAATCAA GTAAAAGATT CCATAAACGG TATTGAACCT 
GCGGGGGGAA GGCTTTTAGA GTACTGGAGT AAATCAATAA TAAAACTTGA AAAAACTGAA 
TCTATTAGAA AACTCACATT AGAAAAACAT AGGCACGCAA AAGAGGGTGA GAATCTAAGG 
TTTAGAATAG TTCAGAATGG TCTTGAAATA ATAAATAAGT CCTATCAATA A 

 

Protein sequence

MLEELLNGNI EKKTITQIYG PPGVGKTNIC ILSMLKAIEN GKNVVYIDTE GSLSIERIKQ 
LSEQDSDELL KSIIIYEPSS FEEQSEALEK IFFLENIGLI VIDGIVSLYR LELCDNINEN 
TKLNRMLGKQ ISNLLKVARM KNSGILITNQ VKDSINGIEP AGGRLLEYWS KSIIKLEKTE 
SIRKLTLEKH RHAKEGENLR FRIVQNGLEI INKSYQ