| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_0052 |
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| Symbol | secD |
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| ID | 4928437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C5 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009135 |
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| Strand | + |
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| Start bp | 42274 |
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| End bp | 43440 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640165550 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001096584 |
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| Protein GI | 134045098 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTGC TAAAAGACCC TAAAGTAATA ATTCTTTTAG TATGTATTTT GGCTTCCTTG
CTACTTATTG CATTTAAGGG AATTTCCTTT GGTGTAGATT TAAGTGGTGG TTCTACAATA
GTATTGCAGA CTGAAACTGA GCTTTCAGAT TCTGAAATGG TAGTTGTAAA TGAAATATTA
ACAAGCAGGC TCAATACAAA CGGACTTAGT GACGTTAGGA TTTACCCAAG AGGCAGTGAC
GAGATAATTA TTGAAATACC TGAAAGTGCA GATCTAGATA GAATAAAAAA AATATTAACA
CAACAAGGGG TATTTATAGC AATAATTAAT AATCAAACTG CATATACTGG GCAGGAAATA
TCTTATGTCG AGGAACCCGG AATAACTGCT TCGGGTTATG GGGTAGGATT TAAATTAACT
CTTGATGGGG CACAAGGCTT TGCAGATGTG GCCTACGGAA AAGGAGGATA TCCTGTAGAA
CTCTACATGG ATGGAAATTT GATAAGTGCT CCGATTCTTT CAGCAGATCT TGCTGATGGA
AATATACACC AAAGTCAGGT AATTACTGTT GCAGGATCTT CTCCTACAGA AGAAGATATC
GATGAAGCAT GGGTTATTTA CACAGCTTTA CAATCTGGTT CACTTCCTGT AAAAGTACAG
ATTGAATATA TCAGCTCAGT TTCCCCTACT TTGGGATCAG AATTTATAAA AGGATCAGCA
ATTGCAGGAT TTTTTGCATT CATTGCGGTT GCAGCAGTCA TTTCATTTAG GTACAAAAAT
CCAAAGATAG TTCTTCCAAT TTTAATAACT GGATTTTCAG AAGTTTTGTT AATTTTGGGT
TTTGCATCAC TTATTAACTG GAAACTTGAC CTTGCATCAA TTGCAGGAAT TATTGCGGCT
GTGGGTACGG GTGTTGATCA CCAGATAGTT ATCACTGACG AAACAATTGC TGGTGAAGCT
AAAAAAGTAA CCAAAAGTAT TAAAAGGGCG TTCTTCATTA TATTCGGTGC AGCGGCTACA
ACAATTGCAG CAATGCTTCC ATTGTTTGTA ATGGGTATTG GAATGCTCAA AGGGTTTGCT
ATAACCACAA TTGCAGGTGT TTTAATGGGA ATTTCAATTT CAAGACCTGC ATTTTCGAGA
ATTATACAAT ATGTATTAAA GCATTAA
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| Protein sequence | MKLLKDPKVI ILLVCILASL LLIAFKGISF GVDLSGGSTI VLQTETELSD SEMVVVNEIL
TSRLNTNGLS DVRIYPRGSD EIIIEIPESA DLDRIKKILT QQGVFIAIIN NQTAYTGQEI
SYVEEPGITA SGYGVGFKLT LDGAQGFADV AYGKGGYPVE LYMDGNLISA PILSADLADG
NIHQSQVITV AGSSPTEEDI DEAWVIYTAL QSGSLPVKVQ IEYISSVSPT LGSEFIKGSA
IAGFFAFIAV AAVISFRYKN PKIVLPILIT GFSEVLLILG FASLINWKLD LASIAGIIAA
VGTGVDHQIV ITDETIAGEA KKVTKSIKRA FFIIFGAAAT TIAAMLPLFV MGIGMLKGFA
ITTIAGVLMG ISISRPAFSR IIQYVLKH
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