Gene MmarC5_0017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmarC5_0017 
Symbol 
ID4928414 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanococcus maripaludis C5 
KingdomArchaea 
Replicon accessionNC_009135 
Strand
Start bp11309 
End bp12970 
Gene Length1662 bp 
Protein Length553 aa 
Translation table11 
GC content42% 
IMG OID640165512 
Productmethyl-coenzyme M reductase, alpha subunit 
Protein accessionYP_001096549 
Protein GI134045063 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4058] Methyl coenzyme M reductase, alpha subunit 
TIGRFAM ID[TIGR03256] methyl-coenzyme M reductase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.61947 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGCTG AAAAAAGATT ATTTTTGAAA GCCTTAAAGG AAAAATTCGA AGAAGACCCA 
AAAGAAAAAT ACACAAAATT CTATACCTAC GGTGGTTGGG AACAGTCAGC TAGGAAAAGA
GAGTTCGTTG AAGCTAATGA AAAAATATTA GCTGAGAAAA GACAAGGAGT ACCACTCTAC
AACCCGGACA TTGGTGTTCC TCTTGGTCAA AGAAAATTAA TGCCTTACAA ATTGTCAAAC
ACTGACGACT ACTGTGAAGG TGACGATTTA CACTTCATGA ACAACGCTGC TATCCAACAA
TTATGGGACG ATATCAGAAG AACCGTTATT GTAGGTATGG ACACTGCTCA CTCAGTTTTA
GAAAAAAGAT TGGGTGTAGA AGTAACTCCT GAAACAATCA ACGAATATAT GCACACAATC
AACCACGCTC TTGCTGGTGG TGCAGTTGTT CAAGAACACA TGGTTGAAGT TCACCCATCC
CTTGCATGGG ATTGTTATGC TAGAATCTTC ACCGGTGACG ATGAGTTAGC TGACGAATTA
GACGACAAGT TCTTAATCGA CATTAACAAA TTGTTCCCTG AAGATCAGGC TGAAACAATA
AAAGCTGCAA TCGGTAAAAA AACATACCAA GTATCAAGAG TTCCATCACT CGTAGGTAGG
GTATGTGACG GTGGTACAAT CTCAAGATGG TCTGCAATGC AGATCGGAAT GTCATTCATT
ACCGCATACA AACTTTGTGC AGGGGAAGCT GCAACAGCTG ACTTCTCATA TGCTTCAAAA
CACGCTGACG TAATTCAGAT GGGTAACGCT TTACCAGGAA GAAGAGCAAG AGGTCCAAAC
GAACCAGGAG GAATCAGATT CGGTATTCTC TCCGATGTTG TACAAACAAC AAGAGTTTCA
GAAGACCCTG TTGAACAATC ATTAGAGGTT GTAGCTACTG GTGCTGCATT ATACGACCAA
ATCTGGCTCG GTGCATACAT GTCCGGTGGT GTAGGATTCA CACAATACGC TACCGCGTCA
TACACCGATG ATATTTTAGA TGACTTCTCA TACTACGGAT TAGATTACGT AGAGAAAAAA
TACGGTAGAA TGGGAACAAA AGCTACAATG GATGTAGTAG AAGATGTTGC TGGTGAAGTT
ACACTCTACG CATTAGAACA GTACGATGAA TACCCTGCAT TATTAGAAGA CCACTTCGGT
GGATCACAAA GAGCTGCGGT TGCGGCTGCT GCATCAGGTA TCAGCGTATG TATGGCAACA
GGTAACTCAA ACGCTGGTGT AAACGGCTGG TACTTATCAC AGTTATTACA CAAAGAATAC
CACAGTAGAC TCGGATTCTA CGGTTACGAC TTGCAGGACC AGTGTGGTGC TTCAAACTCA
CTCGCAATCA GAAACGACGA AGCTGCACCT CTTGAATTAA GAGGACCTAA CTACCCTAAC
TACGCAATGA ACGTAGGTCA CCAGGGAGAA TACGCAGGTA TTGCACAATC TGCCCACTCC
GCAAGAGGAG ATGCATTTGC ACTTAGCCCA TTGGTAAAAG TTGCATTCGC TGACCCAATG
CTCGTATTCG ACTTCTCCAA ACCTAGAAAA GAGTTTGCTA GAGGAGCATT AAGAGAATTC
GACGCTGCAG GAGAAAGAGA CATTATCTTA CCTGCTAAAT AA
 
Protein sequence
MEAEKRLFLK ALKEKFEEDP KEKYTKFYTY GGWEQSARKR EFVEANEKIL AEKRQGVPLY 
NPDIGVPLGQ RKLMPYKLSN TDDYCEGDDL HFMNNAAIQQ LWDDIRRTVI VGMDTAHSVL
EKRLGVEVTP ETINEYMHTI NHALAGGAVV QEHMVEVHPS LAWDCYARIF TGDDELADEL
DDKFLIDINK LFPEDQAETI KAAIGKKTYQ VSRVPSLVGR VCDGGTISRW SAMQIGMSFI
TAYKLCAGEA ATADFSYASK HADVIQMGNA LPGRRARGPN EPGGIRFGIL SDVVQTTRVS
EDPVEQSLEV VATGAALYDQ IWLGAYMSGG VGFTQYATAS YTDDILDDFS YYGLDYVEKK
YGRMGTKATM DVVEDVAGEV TLYALEQYDE YPALLEDHFG GSQRAAVAAA ASGISVCMAT
GNSNAGVNGW YLSQLLHKEY HSRLGFYGYD LQDQCGASNS LAIRNDEAAP LELRGPNYPN
YAMNVGHQGE YAGIAQSAHS ARGDAFALSP LVKVAFADPM LVFDFSKPRK EFARGALREF
DAAGERDIIL PAK