| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3856 |
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| Symbol | |
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| ID | 4924020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4585784 |
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| End bp | 4587673 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640165482 |
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| Product | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA |
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| Protein accession | YP_001095978 |
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| Protein GI | 127514781 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
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| COG ID | [COG0445] NAD/FAD-utilizing enzyme apparently involved in cell division |
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| TIGRFAM ID | [TIGR00136] glucose-inhibited division protein A |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.931734 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000344978 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGCATTTTC ATGAGCGGTT TGATGTAATT GTTGTTGGCG GTGGTCATGC AGGAACCGAA
GCAGCATTAG CATCTGCTAG GATGGGGTCC AAGACATTAT TGTTAACCCA TAATATCGAT
ACCTTAGGCC AGATGTCCTG TAACCCGGCA ATTGGTGGTA TTGGTAAGGG TCACCTTGTT
AAGGAGATCG ATGCCCTGGG TGGCGCCATG GCCGTTGCAA CCGATCATGC CGGTATTCAG
TTTCGCACCT TAAATTCCAG TAAAGGCCCA GCGGTACGTG CTACTCGTGC ACAGGCGGAT
CGCGCCCTCT ATCGCGCCAA GATCCAACAG ATCCTGCAAA ACCAACCTAA TTTACGCCTG
TTCCAACAAG CGGTAGACGA TCTCATCGTC GGGAATGATC GTGTTATCGG GGTCGTTACC
CAGATGGGAC TGGCCTTCGA GGCTCCTGCA ATCGTACTGA CGGCGGGAAC CTTCTTAAGC
GGCAAGATCC ATATTGGTCT GGAAAATTAC AGCGGTGGCC GTGCCGGCGA TCCGCCATCG
ATCTCCCTTG CCGATCGTTT ACGTGAATTA CCGATTCGTG TTGGCCGTCT GAAAACCGGT
ACGCCACCAC GTATCGATGC CAACACCATT AACTTCGATC TGATGACTGA GCAGAAAGGT
GACGATCCTT TACCTGTGAT GTCTTTTATC GGTGACGTTA AAGATCATCC TAAGCAGATC
TCCTGTTTTA TTACCCACAC CAATGAGCGC ACCCACGACA TCATTCGTGG CGGGTTAGAC
AGAAGCCCCA TGTATTCAGG GGTGATCGAA GGCATAGGTC CGCGTTACTG CCCTTCAATC
GAAGATAAGA TCAATCGCTT CGCCGACAAG AGCTCGCATC AGATCTTTAT CGAGCCCGAA
GGCTTGAACA CCAACGAGAT CTACCCTAAC GGGATCTCCA CCAGCCTGCC TTTCGATGTG
CAGCTGAACC TGGTGCGTTC GATTCAAGGC ATGGAAAACG CCGAGATCAT CCGTCCGGGT
TATGCCATCG AATACGACTA TTTCGATCCG AGAGATCTGA AAAACTCTTT AGAAACCAAG
GCAATTTCCG GTTTGTTCTT CGCAGGGCAA ATCAACGGTA CCACAGGCTA CGAAGAGGCC
GGTGCCCAAG GCCTGTTGGC GGGCATGAAC GCCTCATTGC AGGTACAGGG TAAAGAAGCC
TGGTGTCCGC GTCGTGACGA GGCTTATCTC GGCGTCTTGG TCGACGATCT GTCTACCCTG
GGTACCAAAG AACCCTACCG CATGTTCACC AGCCGCGCCG AATACCGTCT GCTGCTGCGT
GAAGACAATG CCGATCTGCG TCTCACCGAG AAAGGCCGCG AGTTAGGTCT GGTGGATGAT
GATCGCTGGG CTAAGTTCAA TGCCAAACGT GAGGCGATCG AGCTCGAGTT ACAGCGTCTG
CGTAGTCAGT GGATCCACCC TAACTCGCCG CTGGTTGATG CGCTTAACCC GCATCTCAAC
ACGCCTATCA CCCGTGAAGC CACCTTCGAG GAGCTGCTGC GCAGACCCGA GCTGGATTAC
CCTAAGCTGA TGAGCGTAGA GGGATTTGGT CCTGCCATCG AAGATCAACG CGCCGCCGAG
CAGGTGCAGA TCCAGGTGAA ATACTCGGGT TACATCCAGC GTCAGCAAGA TGAGATAGAC
AAGGCGATTC GCCATGAAAA AACCGGCCTG CCACAGGATC TCGACTATCA AGAGGTGCCA
GGCCTCTCCA ACGAGGTGAT CGCCAAGCTT AACGATCACA AGCCGGATAC CGTGGGCCAG
GCCTCGCGTA TCTCGGGGAT CACGCCGGCG GCAATCTCTA TTCTACTCGT TCACCTGAAG
AAGCGTGGCT TGCTCAGAAA GAGCGCCTAA
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| Protein sequence | MHFHERFDVI VVGGGHAGTE AALASARMGS KTLLLTHNID TLGQMSCNPA IGGIGKGHLV
KEIDALGGAM AVATDHAGIQ FRTLNSSKGP AVRATRAQAD RALYRAKIQQ ILQNQPNLRL
FQQAVDDLIV GNDRVIGVVT QMGLAFEAPA IVLTAGTFLS GKIHIGLENY SGGRAGDPPS
ISLADRLREL PIRVGRLKTG TPPRIDANTI NFDLMTEQKG DDPLPVMSFI GDVKDHPKQI
SCFITHTNER THDIIRGGLD RSPMYSGVIE GIGPRYCPSI EDKINRFADK SSHQIFIEPE
GLNTNEIYPN GISTSLPFDV QLNLVRSIQG MENAEIIRPG YAIEYDYFDP RDLKNSLETK
AISGLFFAGQ INGTTGYEEA GAQGLLAGMN ASLQVQGKEA WCPRRDEAYL GVLVDDLSTL
GTKEPYRMFT SRAEYRLLLR EDNADLRLTE KGRELGLVDD DRWAKFNAKR EAIELELQRL
RSQWIHPNSP LVDALNPHLN TPITREATFE ELLRRPELDY PKLMSVEGFG PAIEDQRAAE
QVQIQVKYSG YIQRQQDEID KAIRHEKTGL PQDLDYQEVP GLSNEVIAKL NDHKPDTVGQ
ASRISGITPA AISILLVHLK KRGLLRKSA
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