| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3841 |
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| Symbol | |
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| ID | 4924245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4571807 |
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| End bp | 4573945 |
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| Gene Length | 2139 bp |
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| Protein Length | 712 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640165467 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001095963 |
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| Protein GI | 127514766 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000249714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000312087 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCATTTA AGCTAGGTTC GTTTAACTAT TCTCCTGTCG GTTTTGCCGT GTTGGCCGCC
CTGGCGGCAA CGCCAGCAGT GGCCGATGAT GCCGAAAACA GCCTGGTTGA GGCTAATATC
GAACGTATTA CCGTGACGGG GCGAACCTTT AATGACTATA AGGTGGGCGT TGCCTCCGGC
GCCATGCGTG GCGATATCGA TCTTATGGAT ACTCCGCAAT CTGTGGCTGT GATCCCCGAC
TTTGTGACCG ACGAGCAGTT GGCGACCAAC CTGTCAGAGG TACTGGTGAA CGACTCGAGT
GTCACCAGCG GCAGCGAGAA GTGGAATCGT CAGGTGTTTA ACATCCGCGG TTTCGAGCTG
TCATCGGGTT CGGGTTATCT GATCAATGGT CAGCAGCAGT GGTCTCACTA TGTGCAGCCT
ATCGAGACCC TGCAACAGGT AGAGGTGTTA AAAGGACCCT CTAGCATGCT CTATGGCCAG
TCTGGCCCAG GCGGCCTGAT CAACATGGTC ACCAAGAAGC CTACCTATGA CACCCTGTTT
GAGCTGGGCT TCGACACCGA CGAGCATGGA TCGACCCGTT ATCAGCTGGA TGCCGGTGGC
AGCCTGAATG AAGCGCAGAC CATACGCTAC CGCACAGTGC TGGTTAAGCA AGACACTCAA
TATTGGCGCG AATATCAGGA CGGCAGCAAT CAGGAGCGCG ATCGCTGGTT AGGCTATCTG
AATCTGGAGT TCGATATCAC CGACGATCTT ATGCTGTCGC TCAAGTATGA CCATACTCAG
GATAAGACGG GCATAGACCG TGGTGGCTGG TTAAATAGCG ATGGTGAGTT AATAGGTGGC
AGAGATATCA TCTGGGATCA GCCCTGGGCC TTTACCGACA ACACCATCTC AAACCTGGGC
GCCGAGCTAA CCTATCATCT CAGCGACGAT TGGCAGATCA AGGCGGGTTA TAACGACCAG
CAGTTTAATC GTCAGCGTTT AGATTCTTCA CCTAGCCTAG TAAAAGGCTC GGAAGATCCT
TTCACCGATG GTTACACCAT TAGCCCGTTC GACCGTTATG ACGACTGGCA ACACAAGACG
GGCTTCATCG ACTTTACCGG CGACTTTAGC ACCGGTGACT TCGAGCACAA GCTGTTGATC
GGCGCCAATA TGCTGGACTA CTACTATGGC CAGCTAAAGG AGGCGGGAGA TAAGAACCAG
CTGGTGATGC CGGGGCAGCC TGTGCCTCGT CCGGACTTGG ATTATCATCG CGACACCACC
AAGTCTGAAT CCGACTATAA GCATTATGGC TTCTATATTC AGGATCTAAT GACCATCAAC
CAGCAATGGC AGTTGTTGGC TGGCGTACGT TACGATGAGC AGAAGAAGGA TGGTAAGGGC
AACAACAGCT ATGCGGTATC GCCTAAGTTT GGGGTGATCT ACTCGCCGGC AGAGAATGGC
AGTATCTACT TCAATTACTC TAAGAGCTTC ACGCCACAGG GGATGGTGAA TGATCCGGAT
GATGTGAACG ATCAGATGAA TCTGGACCCA GAGTATGGCG AGCAGTATGA GGTCGGTACC
AAGTGGGAGC TGTTCGATGG CAGTCTGCTG CTAACCGGCG CTGTCTTCGA TATTACGGTA
TCCAATGTTA CCGTGACCCA AGATCTTGAG GTGATCCCGA CCAGTGGCGA TAAGACGATC
ACCACTCAAT CCGGTGAACA GCGTCATAAA GGCTTCGAGA TGGGGGCACA GGGACAGCTG
AGCGACAAGT GGTTCATGAC TGGATCTATG ATGTATCTCG ATGCCGAGTA TCAACGCCCG
CAAGAAGACA GACTTAACGG CAAGACGCCC GTAGACGCAC CCGAGTGGTC GGCCAACATC
TGGACCCGCT ACGAGATGAC AGAGGCCTTA GCACTTAACT TTGGTGCCAT CTATGTGGGC
GAGCGCTTCG CCAATACGGA TAACACCATT ACCAAGGATG CCTATGTGCG CTTCGATATC
GGCGCCGCCT ATACCATGGA TGTGATGGGG AGCGATGTCA GCGTACGCCT CAATGTGAAG
AACCTGTTCG ATACCGATTA CCTGGCCGGT GGTACCAATA CGGATGTTAC CGTGGGTGAG
GGACGTCATT TCGGCTTAGC GCTGCAAGCC AAGTTTTAA
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| Protein sequence | MSFKLGSFNY SPVGFAVLAA LAATPAVADD AENSLVEANI ERITVTGRTF NDYKVGVASG
AMRGDIDLMD TPQSVAVIPD FVTDEQLATN LSEVLVNDSS VTSGSEKWNR QVFNIRGFEL
SSGSGYLING QQQWSHYVQP IETLQQVEVL KGPSSMLYGQ SGPGGLINMV TKKPTYDTLF
ELGFDTDEHG STRYQLDAGG SLNEAQTIRY RTVLVKQDTQ YWREYQDGSN QERDRWLGYL
NLEFDITDDL MLSLKYDHTQ DKTGIDRGGW LNSDGELIGG RDIIWDQPWA FTDNTISNLG
AELTYHLSDD WQIKAGYNDQ QFNRQRLDSS PSLVKGSEDP FTDGYTISPF DRYDDWQHKT
GFIDFTGDFS TGDFEHKLLI GANMLDYYYG QLKEAGDKNQ LVMPGQPVPR PDLDYHRDTT
KSESDYKHYG FYIQDLMTIN QQWQLLAGVR YDEQKKDGKG NNSYAVSPKF GVIYSPAENG
SIYFNYSKSF TPQGMVNDPD DVNDQMNLDP EYGEQYEVGT KWELFDGSLL LTGAVFDITV
SNVTVTQDLE VIPTSGDKTI TTQSGEQRHK GFEMGAQGQL SDKWFMTGSM MYLDAEYQRP
QEDRLNGKTP VDAPEWSANI WTRYEMTEAL ALNFGAIYVG ERFANTDNTI TKDAYVRFDI
GAAYTMDVMG SDVSVRLNVK NLFDTDYLAG GTNTDVTVGE GRHFGLALQA KF
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