| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3808 |
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| Symbol | |
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| ID | 4924162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4531636 |
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| End bp | 4532841 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640165434 |
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| Product | carboxyl-terminal protease |
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| Protein accession | YP_001095933 |
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| Protein GI | 127514736 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0793] Periplasmic protease |
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| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.756218 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCAAA TGATCCGCTA TTTCACCTGT GTCGCCCTAG GGCTGACCCT AGGTCTCTCT
ATCACCTTGT TCGGCCACGA GAATGCCAAA GAGTATCAGC CCAAGGTCAA TTACCCCCTC
CTCATCGACA TCATCAGCAC GGTAGAGACC TACTACGTAG ACAAGATCTC TCAGGAAGAT
CTGATCCAGG CCGCCATTGA GGGGGTATTC AGCAAGCTAG ACCCCTATTC AAACTTCCTC
GACAGCCAGG CCTTCTCCGA CATCAAGGAC GCCAACAAGG GCGAATACTT CGGTTTCGGC
ATAGAGATAG CAACAGAGCA GAACCAAGTC ACCATCATCA GCCCCTTTCC CCATTCACCA
GCCGCCAACG CAGGCATTCA GCCCGGAGAC CGCATCGTCA AAGTCAATAA TGAGGCAGTA
ACCGCCAAGC AACTCGAAAA TGTGCTGGAG GAGATCAAGT TCCACAGTCA GCATAATCTG
GCCATCAACC TGTCGTTAAG CCGCGCCAAC TCGGAAGCCC TGTTCGACGT GACACTCACC
CCTAGTCTTA TCGATGTCAA CTCGGTAGAG GGCGAGCTGC TCGACAACGG CATAGGCTAC
ATCAAACTCT CCAGCTTTCA GGACGACTCT ACCGAAGATC TCATTAAGCT GCTGACCCAA
TGGCAAAATG AGCCCATGAC AGGCCTGATC CTGGATCTGC GTAACAACCC TGGCGGCTTG
CTGGATCAGG CGATCAAGAT TGCCGACATC TTCCTCGCCA AGGGGCGTAT CATATCTACC
CGGGGCCGCT TCTTCGACGC TAACTCCGAC TACTTCGCCT CACCACAGAC CATGTTCTCC
AAGCTGCCAC TTACCGTGCT AATCAACAAG GGGTCGGCCT CGGCCTCGGA GGTACTGGCG
GCAGCGCTTC AGGAAAACAA GCGCGCCACA CTGATCGGCG AAAAGAGCTT CGGTAAGGGT
ACGGTGCAGA GCCTGATCCC CACTCTTATC GAGGGCAATG CCATCAAGCT AACCATAGCC
CACTACACCA CACCCAAAGG CAGGGACATA CACGCCATCG GCATAGAGCC AGATATAAAT
ATCCCGGGCG AGACTATGAC TGCCGGACAA AGTATGCCTA TAATCGATAA GCAAACACCC
CATGAGGGAG CCGCCCACGA TAAGGTTATC GAATCGGCGA TCTCATGGAT AAAAACAAAT
AGTTAG
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| Protein sequence | MSQMIRYFTC VALGLTLGLS ITLFGHENAK EYQPKVNYPL LIDIISTVET YYVDKISQED
LIQAAIEGVF SKLDPYSNFL DSQAFSDIKD ANKGEYFGFG IEIATEQNQV TIISPFPHSP
AANAGIQPGD RIVKVNNEAV TAKQLENVLE EIKFHSQHNL AINLSLSRAN SEALFDVTLT
PSLIDVNSVE GELLDNGIGY IKLSSFQDDS TEDLIKLLTQ WQNEPMTGLI LDLRNNPGGL
LDQAIKIADI FLAKGRIIST RGRFFDANSD YFASPQTMFS KLPLTVLINK GSASASEVLA
AALQENKRAT LIGEKSFGKG TVQSLIPTLI EGNAIKLTIA HYTTPKGRDI HAIGIEPDIN
IPGETMTAGQ SMPIIDKQTP HEGAAHDKVI ESAISWIKTN S
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