Gene Shew_3782 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3782 
Symbol 
ID4924202 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4501477 
End bp4502613 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content58% 
IMG OID640165408 
ProductABC-2 type transporter 
Protein accessionYP_001095907 
Protein GI127514710 
COG category[P] Inorganic ion transport and metabolism
[C] Energy production and conversion 
COG ID[COG1668] ABC-type Na+ efflux pump, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAGTT CAATCATTAC TATGGTCAGA AAAGAGCTGA CCGATGCCGC CAGGGACAAG 
CGCTCTGTGA TGGCGGGCCT CTACTACGCC ATCGGCGCGC CGCTGATGAT GTGCGGCATG
TTTATGATCC TCATCGGCCA AATCACCAGC CCAGAGGCGC TTAACATCAC CATCACCCAC
GGCGAGCGCG CACCGGATCT AGTGAAGTAC CTCGCCAGCA ACGAGATAAG CCAGGGTGAT
GAGGCCGATC GCAAGGAGAT AGAACTTGTC ATCAGCCCAG ACTACGCCGC TAACATGGCC
AAGAGTCAGG CCGCCGAGAT AGTGCTGATC GCCGACAACT CCAACGAGAA GCTACAGTCT
TCTATCCGTC GGCTGGAGAA GGCGCTGCAG CAATACAGCG CCGAGATCGG CAGCCTGCGA
CTGATCGCCC GCGGCATAGA CCCTAAGGTG ATGCAGCCAA TCAAGGTCAA GGTGGAAGAT
CAGGCCACCT CAGACTCCAA GGGCGGGATG ATCTTAGGCG TCGCCATCTT CATGATGGTC
TATGCGGTGT TTATCTCCGG CATGAACCTG GCCATAGACA CCAGCGCCGG CGAGCGTGAA
CGCAACTCGC TGGCCCTGCT GCTCAGCCAT CCGGTATCGA CCCGGGATAT CGTACTGGCC
AAGGTGGCGG CGGTGACCAT CTTCGCCATG CTGGGGCTGA TCCTCACCCT GGTGATCTCT
AAGGTCGCCT ATGGCTTCGT GCCTTGGCAG GAGCTGGGCT TCTCGGTCAA CATCAATGTC
GACTTCATCC TCTTGATGTT GGCGATCGGC CTGCCCATCG CCCTGATGGC GGCGGCGCTG
CAGCTGTTCG TCTCCTTCAT GGCCAAGTCG TTCAAGGAGG CGCAGTCCTA CCTGACCATA
GTGCTGATCG TGCCCATGAT GCTGTCGATG GCGGCGAGCT ACAACATAGC GCCAGATACC
CTGCAGTGGC TGCCTATCTC GGGACAGATG CAGGCGCTGA TCGCCTTCAT CAAGGGCAAG
GAGATCCCCA TGATGCAGCT GGCGCTCTCC AGCGCCATCA CCTTCGTCAT CGCCCTGGCA
CTGGCCCTGG GCATGGAGCG CTCACTCAAG AGCGAGAAAA TCGTCTTCGG ACTCTAA
 
Protein sequence
MISSIITMVR KELTDAARDK RSVMAGLYYA IGAPLMMCGM FMILIGQITS PEALNITITH 
GERAPDLVKY LASNEISQGD EADRKEIELV ISPDYAANMA KSQAAEIVLI ADNSNEKLQS
SIRRLEKALQ QYSAEIGSLR LIARGIDPKV MQPIKVKVED QATSDSKGGM ILGVAIFMMV
YAVFISGMNL AIDTSAGERE RNSLALLLSH PVSTRDIVLA KVAAVTIFAM LGLILTLVIS
KVAYGFVPWQ ELGFSVNINV DFILLMLAIG LPIALMAAAL QLFVSFMAKS FKEAQSYLTI
VLIVPMMLSM AASYNIAPDT LQWLPISGQM QALIAFIKGK EIPMMQLALS SAITFVIALA
LALGMERSLK SEKIVFGL