| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3780 |
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| Symbol | |
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| ID | 4924200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4499200 |
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| End bp | 4500753 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640165406 |
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| Product | TAP domain-containing protein |
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| Protein accession | YP_001095905 |
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| Protein GI | 127514708 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAATA GATTCACCCG GCAGCAGCGG CTGGCCGCGC TACTCCTGCC CGCCTGCTTG
GCGCTACTGC TGTTATCTCA GCCCACCTGG GCAGACACTC AACCAGCAGA TCAGCAAGAC
AGCAAATCTG AGTCTTGCTA TGTAGACGAC CTGTCTGATC GTCTGCGCTG CGGCGCCATC
ACGGTACCGG AAAACTACGC TAAGCCCCAG GGCAAACAGA TACAGATCCA CTATCTGGTT
CTGCCCGCCA TCAAGCCCAG TTTCGAGAAA GAAGCGCTAT TAGCCATCGC CGGCGGCCCA
GGCCAATCGG CCATAGATAA CGCCGCCAGC TTCGACAAGA TCTTTACCAA GGTGCGCCAG
CAGCGAGATA TACTGCTGAT CGACCAGCGC GGCACAGGCC TCTCCAACCA ACTCGTCTGT
GAAGGCGCCG GCTTCGAGGG TGGCCTGGCC TTCAACGACG ATGAGCTGAA TATCGCCACC
GAGACCAAGG CCTGCCTCGC CAAGATAGAT GCCGATGTCA GCCAGTATGG CAGCGAAACT
GCCCTCAAAG ATTTCGAGGC GGTCAGGCAA GCCCTGGGAT ACCAGAAGCT GCACCTGTAT
GGCATCTCCT ACGGTACCCG CATGGCCCAG CTCTATATGC GTCACTACCC AGAGGCCCTG
GCTACCGTGA CCTTGGACGG CGTGGTGCCC ATGCAGCAGA GTGTGCTTAA TATCGGCGAC
GCCATCACCC GCGCCATCGA CCTGCTGCTT AAAGATTGCC AGGGCAACGC CCTGTGTCAT
CAAGAGTTCC CTAATCTCAA AGCTGAACTC GACCAGGTCG AGGCGCAGCT CAGCCAGGGG
CCGCAGATCA GTCAGACCCG CGATCCCCTC ACCAATGCGC CGACCCAGCT CACCATGACC
CGCGCCAAGT TTATGGGCGC CATCCGTATG GCGCTTTATA TGCCTAATGT CAGGGCGCTG
CTGCCCCACG CCATCCACCA AGCGGCTGAG GGGAATTTTC AGGCCATCAT GGGGCTGTAC
GCCCTCACGA TGAACAGCAC TGGCATCGCC GCCGGCATGC ACTCGGCCGT GGTCTGTGGC
GAAGACTGGC ACCGCTTCAG CGAAGCCGAG CGTCAGCAGA TAGGCCAGAG TTACTTCGGT
CGTGAGATGC TTGAGGCCTT CGATCTGAGC TGCCCTATCT GGCATATTCC GGCGGTAGGT
GAAGATTTCT CCGCCCCCAT AGCCAGCGCC CTGCCGACAC TCGTGCTATC GGGACAGATA
GACCCGGCCA CACCACCGAG TTGGGGCGAG CTGGCCATGG CCAAGCTGAC CAATGCCAAG
CATTTCGTCG CCCCCTATGC GACCCATGGG GTGGCCTATC AGTCTTGCGC CAACACACTG
ATCGCGGAGC TTATCAGCAG CGGCAGCGTC GACGGCCTGT CTCAGGAGTG CCTGAGCAAA
GATATCAGTC GTAACTTCTA CCTCAACGCC AACACGGTTG AGGCCATCCC ACAGGACACA
CTAAGCCATT CCACTCTCGG TGGCGACCAG CAGCAAGGAG CACGCCATGA TTAA
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| Protein sequence | MANRFTRQQR LAALLLPACL ALLLLSQPTW ADTQPADQQD SKSESCYVDD LSDRLRCGAI
TVPENYAKPQ GKQIQIHYLV LPAIKPSFEK EALLAIAGGP GQSAIDNAAS FDKIFTKVRQ
QRDILLIDQR GTGLSNQLVC EGAGFEGGLA FNDDELNIAT ETKACLAKID ADVSQYGSET
ALKDFEAVRQ ALGYQKLHLY GISYGTRMAQ LYMRHYPEAL ATVTLDGVVP MQQSVLNIGD
AITRAIDLLL KDCQGNALCH QEFPNLKAEL DQVEAQLSQG PQISQTRDPL TNAPTQLTMT
RAKFMGAIRM ALYMPNVRAL LPHAIHQAAE GNFQAIMGLY ALTMNSTGIA AGMHSAVVCG
EDWHRFSEAE RQQIGQSYFG REMLEAFDLS CPIWHIPAVG EDFSAPIASA LPTLVLSGQI
DPATPPSWGE LAMAKLTNAK HFVAPYATHG VAYQSCANTL IAELISSGSV DGLSQECLSK
DISRNFYLNA NTVEAIPQDT LSHSTLGGDQ QQGARHD
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