| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3738 |
|---|
| Symbol | |
|---|
| ID | 4921032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 4451122 |
|---|
| End bp | 4452405 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640165364 |
|---|
| Product | sun protein |
|---|
| Protein accession | YP_001095863 |
|---|
| Protein GI | 127514666 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00223417 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAACC TGCGAGCCCT CGCGGCCAGA GTCGTCTTCC AGGTATTAGA GAAAGGGGTC
TCACTGTCCG TGGCCCTGCC CGAACAGCAG CAGCGACTCA CCAGTGGGAA AGACAAGGCC
CTGTTGGCCG AACTCTGCTA TGGCGTGATG CGTCACCTGC CCCAACTCGA TAAGCTAGTG
AGCGACTGCA TGAGCAAGCC ACTCAAGGGC AAGCAGCGCA TCGTACATCA GCTGCTACTC
GTGGGATGTT ATCAGCTCTA TTTCACCCGT ATCCCTGGCC ATGCGGCAAT CTCGGAAACC
GCCGAGGCCT GTCGCCAGCT CAAGTTTGAG GGACTGGTCA AGGTGGTCAA CGGCGTGCTG
CGCAACTTGC AGCGCAACCA GAAGCCGCTG CCCGAAGACA ACGAGACCCT GGCCTTCAAC
ACCCCAGCCT GGTTGATCAA GCGCCTCAAG GCCGCCTATC CAGACAGCTG GCAAGAGATG
ATCGCCCAGA GCCATCAGCG TCCGCCCATG TGGCTGCGTA ACAATCAGTT GTCCCAGACC
CGAGAGCAAT ATCTGACGCT ACTCGACGAG CAGGAGATAG CGGCCACACC GGGTGCGAGC
AATGACGCCA TACTACTGGA GAGCCCGAAA GATGTCGGCA TGCTCCCAGG TTTTGCCGAT
GGTGTCGCCT CGGTACAAGA TGGCGCCGCA CAATGGGCCG CCAGCCTGTT GGCACCCGAA
GCAAATGAAC TGATTCTCGA TGCCTGCGCC GCCCCCGGCG GCAAGAGCTG TCATCTGCTG
GAGAGTCAGC CCAGCATAGA TCTGGTGGCG GTCGACTTCG ACGCCAAACG CCTGGAGCGG
GTGCAGCAGA ACCTCGACAG ATTAAGCCTC AAGGCCAAGT TGGTGCACGG CGACGCCGCC
AAGATAGACT CCTGGTGGCA GGGCGATAAG TTCGACCGCA TCCTGCTGGA CGCGCCTTGT
TCGGCCACCG GCGTGATCCG CCGCCACCCG GACATCAAAT GGCTACGAAA GCAGGCCGAT
ATCGAAGAGC TAGCCACATT ACAGTCACAA ATTTTGGATC ATTGCTGGCA GTGGCTTAAA
CCCGGTGGCA CACTCCTGTA TGCTACATGC TCAATTTTAC CGCAAGAGAA CGCCGAGCAG
ATCGCGGCTT TCTTAGCGAG AACCCAAGAC GCAACCCTGA TTCCAATCGC ACAACAACAA
AACAGCGATG ACATTGGCTG GCAAATCACG CCGGGCCAAG ACAATATGGA TGGGTTTTAC
TACGCTCGCT TGGTTAAGGG ATAA
|
|---|
| Protein sequence | MKNLRALAAR VVFQVLEKGV SLSVALPEQQ QRLTSGKDKA LLAELCYGVM RHLPQLDKLV
SDCMSKPLKG KQRIVHQLLL VGCYQLYFTR IPGHAAISET AEACRQLKFE GLVKVVNGVL
RNLQRNQKPL PEDNETLAFN TPAWLIKRLK AAYPDSWQEM IAQSHQRPPM WLRNNQLSQT
REQYLTLLDE QEIAATPGAS NDAILLESPK DVGMLPGFAD GVASVQDGAA QWAASLLAPE
ANELILDACA APGGKSCHLL ESQPSIDLVA VDFDAKRLER VQQNLDRLSL KAKLVHGDAA
KIDSWWQGDK FDRILLDAPC SATGVIRRHP DIKWLRKQAD IEELATLQSQ ILDHCWQWLK
PGGTLLYATC SILPQENAEQ IAAFLARTQD ATLIPIAQQQ NSDDIGWQIT PGQDNMDGFY
YARLVKG
|
|---|
| |