| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3734 |
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| Symbol | |
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| ID | 4921028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4447300 |
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| End bp | 4448319 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640165360 |
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| Product | DNA protecting protein DprA |
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| Protein accession | YP_001095859 |
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| Protein GI | 127514662 |
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| COG category | [L] Replication, recombination and repair
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0758] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake |
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| TIGRFAM ID | [TIGR00732] DNA protecting protein DprA |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.242141 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0022522 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATGTAG CAGAGCTCAG GCAAAGGCTG GAGCATGAAC CCGATGCCTT ACCCCTGCCT
GAGCGCCTAT TGACGGCTAA GCTGTCCCCC GATTTTTCTT TGGTCGAACA GGCGCTAGCT
TGGCAAGATG CCGCGCCTCA CCATCATATT CTCTGTCCCC AAGATACTCT CTATCCAAGT
CTGCTACTGC AGCTCAACGA CCCGCCGCCG ATTCTCTTTG CCAAAGGCGA TCCCAACGCC
TTGGTGCATC CCTGTATCGC CATGGTGGGT AGCCGCGCCG CGTCTCAGTC GGGATTAGCC
GCAAGCTATC AACTGGCCCA GGAGCTAACC GCAGCTAAAA TTGCGGTGAT CAGCGGCATG
GCGGCCGGTA TCGACGGCGC GGCTCATCAA GGTGTATTAG ATGCCGATGG CGTGACCCTG
GCCGTGTTGG GCACAGGCAT AGAGGTCATC TATCCCAAAC GTCACAAACC CATCTACGAG
AAGATTCAGC AGAGGGGCTG TGTGCTCAGC GAGTTCTGGC CCCAGATAAA ACCCTACGCC
GGTAACTTTC CTAAGCGTAA TCGCATCATC AGCGGACTGT CGCTGGGCGT GCTCGTGGTG
GAGGCGGCGC GAAAGAGTGG CTCGTTGATC ACCGCGAGAT TTGCGCTGGA GCAGGGCCGC
GAGGTGTTTG CCGTGCCGGG CAATATCCTG GCGGGGGATC ATCAGGGCTG TCATGATTTG
TTACGAGATG GCGCTAAACT GGTGGAGTGC GCCGCCGATA TTATCGAAGA GGTTGCAGCT
TTATCAAAAT TTCACCTTGA AGAGTTGCAT CGTCGTCACC ATATAGGGGA GGAGTTAGCT
TCTGATTTGC CATTTGCCTC ACTGTTAGCT AGTGTAGGCT ATGAGGCCAC ACCATTAGAT
GTGGTGGTCG AGCATAGTGG AAAAACGATA GAGCTAGTAT TAGAGCAGTT GCTTGAACTT
GAACTACAAG GTTGGGTTTC AGCTGTACCC GGTGGTTATA TAAGACTTAA GAGGAGCTAG
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| Protein sequence | MDVAELRQRL EHEPDALPLP ERLLTAKLSP DFSLVEQALA WQDAAPHHHI LCPQDTLYPS
LLLQLNDPPP ILFAKGDPNA LVHPCIAMVG SRAASQSGLA ASYQLAQELT AAKIAVISGM
AAGIDGAAHQ GVLDADGVTL AVLGTGIEVI YPKRHKPIYE KIQQRGCVLS EFWPQIKPYA
GNFPKRNRII SGLSLGVLVV EAARKSGSLI TARFALEQGR EVFAVPGNIL AGDHQGCHDL
LRDGAKLVEC AADIIEEVAA LSKFHLEELH RRHHIGEELA SDLPFASLLA SVGYEATPLD
VVVEHSGKTI ELVLEQLLEL ELQGWVSAVP GGYIRLKRS
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