| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3731 |
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| Symbol | |
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| ID | 4921025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4444254 |
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| End bp | 4444817 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640165357 |
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| Product | DNA topoisomerase type IA Zn finger domain-containing protein |
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| Protein accession | YP_001095856 |
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| Protein GI | 127514659 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00032543 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00694812 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTAAGA TAGATGATCA ACTGTTTAGT TCACACGAGC ATGCACTGGA GAAAGAGTAT
GAACTCTGCC CTAAGTGTGG CTGTGAGCTG TCGGTGAAAA ACAGTAAACA TGGTGGATTC
ATCGGTTGCA ACAACTATCC CTGCTGTGAC TACACCCGGC CTCTGGTGCA TCACGAGTCG
ATCGAGACTC AGGTGATCGA AGGCTCAGAG TGCCCAGAAT GTGGCGCCGA GTTGGCAGTA
AAGTCGGGTC GTTTCGGTAT CTTCATCGGC TGTACCCGCT ACCCTGATTG TAAGCATATC
GAGAAGCAGG ATCAGGAAGA CCCCGCCGAG GCCGTCACCT GTCCCAGCTG TCATAAAGGG
GTGATGGAGC ATAGAACCAG CCGCTTCGGC AAAAGCTTCT ATGCCTGTAG CGCCTATCCT
AAATGTAAGT TCTTGGTGAA TTACCCGCCC GTGCAGGAAG CCTGCCCCGA TTGCGGCTTC
GGTATCTTAG TCGAGCGCAA GGGCGCCGCC GGTATGCGCC TGGAATGTCC GCAAAAGAGT
TGTAAGTATA AGCGTCCGCT ATAG
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| Protein sequence | MSKIDDQLFS SHEHALEKEY ELCPKCGCEL SVKNSKHGGF IGCNNYPCCD YTRPLVHHES
IETQVIEGSE CPECGAELAV KSGRFGIFIG CTRYPDCKHI EKQDQEDPAE AVTCPSCHKG
VMEHRTSRFG KSFYACSAYP KCKFLVNYPP VQEACPDCGF GILVERKGAA GMRLECPQKS
CKYKRPL
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