Gene Shew_3716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3716 
Symbol 
ID4921073 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand+ 
Start bp4422745 
End bp4423365 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content49% 
IMG OID640165338 
Productcytochrome c, class I 
Protein accessionYP_001095841 
Protein GI127514644 
COG category[C] Energy production and conversion 
COG ID[COG2863] Cytochrome c553 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.0000156417 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGT TCGCTATTGC GCTATCGATG TTAGCCACTC TATCAACTCC GGCTCTAGCA 
GCAGGTGATG CTGAAGCGGG AAAAACTAAA GCAATCATTT GTTCTGCCTG TCACGGTGTT 
GATGGTAACA GTATGATCGA CATGTACCCC AAGATTGCGG GTCAACAAGA AACTTACCTG 
AAGAAGCAGC TAACCGAGCT GCGTCAAGCT GCCCACACAG GCGGTAAAGA AGGCCGTAAC 
GATCCTATGA TGAGCCCAAT GGCGGCGGCA TTGTCGGATC AGGATATCGA AGATTTAGCG 
GCTTACTTCT CTTCGCAAAA ACTTGCGATG AGCGAAGTCA AAGACGTGCC TGAACTGGGT 
GAGCAACTAT ACAAGGGTGG TGACGCCGTA CGTGGTGTGA CTGCATGTAT CGCCTGTCAC 
GGTCCGAGCG GTAAAGGTTC TGAGGCTGCA GGCTTCCCAG CTATCGCGGG CCAACACGCT 
AACTACATCA AGATCCAGCT GAATAAGTTT CACGATACAA GTCGTAACAA CGACCTAAAC 
GGCATGATGC AAGACGTTGC CAAGAAGCTG ACCAGCGAAG ATATCGAAGC ACTATCTAAA 
TATATTTCAA GCATTAAGTA A
 
Protein sequence
MKKFAIALSM LATLSTPALA AGDAEAGKTK AIICSACHGV DGNSMIDMYP KIAGQQETYL 
KKQLTELRQA AHTGGKEGRN DPMMSPMAAA LSDQDIEDLA AYFSSQKLAM SEVKDVPELG 
EQLYKGGDAV RGVTACIACH GPSGKGSEAA GFPAIAGQHA NYIKIQLNKF HDTSRNNDLN 
GMMQDVAKKL TSEDIEALSK YISSIK