| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3714 |
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| Symbol | |
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| ID | 4921071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4418346 |
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| End bp | 4421138 |
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| Gene Length | 2793 bp |
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| Protein Length | 930 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640165336 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001095839 |
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| Protein GI | 127514642 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00250516 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAGCGC CATCATCGCA TACCGAAAAA ATAGATAAAA TTATGCCTAA TATCGCTGAA
AACCCACTCA TTCTTGTGGA TGGTTCTTCC TATCTTTACC GCGCCTACTA TGCGCCGCCT
CACCTGACCA ACTCCAAGGG TGAGGCCACG GGGGCTGTGT ATGGCGTGAT CAACATGCTA
CGCAGCCTGC TCAACCAATA TAAGCCTACC CAGATGGCGG TGGTGTTCGA TGCCAAGGGA
AAAACCTTCC GCAATGAGAT GTATGCCGAA TATAAGGCCC ACAGACCCCC CATGCCGGAC
GATCTCAGGA CGCAGATCGA GCCGCTGCAT CGCATCATTC GCGCCCTGGG GCTTCCCCTA
GTCTGTATTC CCGGCGTCGA GGCCGATGAT GTCATAGGCA CCATCGCCAG ACAGGCGAGC
CAGGAAGGCC GCGCCGTGCT GATCAGCACA GGCGATAAAG ATATGGCGCA GTTGGTGGAT
GATAAGATCA CCCTGATCAA CACTATGACC AACACCATCC TAGGCCCCGA TGAGGTGAGC
GAGAAGTTTG GTGTCGGCCC TGAGCTGATC ATCGACCTAC TGGCACTGCA AGGCGATAAG
GCAGATAACA TCCCCGGCCT GCCCGGTGTC GGTGAGAAGA CGGCGCTGGC TATGCTACAG
GGTGTAGGCG GCGTCGAAGC CATCCTCGCC AACCCAGAGA AGATGCCGGA GCTCGGCTTT
AGGGGTGCTA AGACCATGCC CGCCAAGATC GCCGAACATG GCGACATGCT GAAACTCTCC
TATGAGCTGG CGACCATCAA GTGCGATGTC GAACTAGAAC AAGACTGGCA CCAACTCAAC
ATTCAAGGCG CGGATCGCGA CGAACTGATC AAATGCTACG GCGAGATGGA ATTCAAACGC
TGGCTGGCCG AGGTGTTAGA CAACAAGTCG AGTGCCAGCA GCCAAGAAGA GGCCGACGAA
GTGCCGGCGC CTCAGGCTAT CGATACCCAG TACGACACCA TTCTGACCTG GGAAGCCTTA
GATGAGTGGC TCAAGGCCCT GGCCGCCGCA CCACTATTTG CCCTGGATAC CGAAACCACC
AGCCTCAACT ACATGGAGGC CAAAATGGTA GGGCTCTCGT TTGCCATCGA ACCAGGCAAG
GCCGCCTATC TGCCGCTGGC ACACGATTAT GCCGATGCCC CAGAGCAGCT CGACAGCGAG
CAGGTACTGG CCAAGCTCAA GCCACTGCTG GAAGATCCTA GCCTTCTCAA GGTGGGACAG
AACCTCAAGT ATGACATGAG CATACTGGCC AATGTCGGCA TCGCCCTCAA GGGCGTGGCC
TTCGATACCA TGCTCGAGTC ATATGTATTT AACTCGGTCG CCTCCAAGCA CAACATGGAT
GACCTGGCGC TGAAATACCT GGGTCATAAG AATATCAGCT TCGAAGAGAT CGCCGGCAAG
GGCGTTAAGC AGCTGACCTT CAACCAGATC CCGCTGGAAA CTGCGGCCCC TTACGCCGCC
GAAGACGCCG ACATCACACT CAGGCTGCAT CAGCATCTCT GGCCGAGACT GCAAAAGGCC
AGCGAACTTG CTAGCGTCTT TACCGACATA GAACTGCCTC TGGTCAGCAT ACTGTCTCAG
ATTGAACGTC AGGGCGTGTT GATCGACAGC ATGCTGCTGG GTCAGCAGAG CGACGAATTG
GCGCGCAAGA TAGACGAGCT GGAACAGAAG GCCTATGAGA TCGCCGGCGA GCCATTTAAC
CTTGGTTCGA CCAAACAGCT GCAGGCCCTC TTCTTCGAGA AGCTGGGTTA CCCAGTATTG
AAGAAGACCC CTAAGGGCGC ACCGTCCACC GCCGAAGAGG TGCTGGTCGA GCTGGCCCTG
GACTATCCGC TGCCCAAGAT CATCCTGGAG CACAGGAGCT TATCTAAGCT TAAGAGCACC
TACACAGACA AGTTGCCGCT GATGGTCGAT GGCAAGACTG GCCGGGTACA TACCAGCTAC
CACCAGGCCA TCGCCGCCAC GGGTCGCCTG TCATCCAGCG AGCCTAACCT GCAGAACATC
CCCATCCGCA CCGAGGAGGG CCGCCGTATT CGTCACGCCT TCGTGGCGCC AGAGGGACGC
AAGATCCTCG CAGCCGACTA TTCGCAGATC GAGCTGAGGA TCATGGCTCA CCTCTCCCAG
GATAAGGGGC TGCTGAGCGC CTTCGCAGAG GGCAAGGATA TTCACAGAGC TACCGCCGCC
GAGGTGTTCG ACGTCGACTT CAGTGAAGTC ACCAGCGAAC AGCGTCGCCG CGCCAAGGCG
GTGAACTTCG GTCTCATCTA TGGCATGTCG GCCTTTGGCC TGGCCCGCCA GCTGGATATT
CCACGTCACG AGGCCCAGCA ATATATCGAC ATCTACTTCA AACGCTATCC AGGCGTGCTC
AAGTATATGG AAGATACCCG CGCTGCCGCC GCCGAACAGG GATACGTATC GACCCTCTAT
GGTCGCAGGC TCTATCTGCC GGCCATCAAG GATAGAAACG CCATGCGCCG TCAGGCAGCG
GAGCGCGCCG CGATCAACGC GCCGATGCAG GGCACGGCCG CCGATATCAT CAAGAAGGCC
ATGATCAATA TCGCCCAGTG GATCGAGACA GAGACCCAGG GAGAGATCAC CATGATCATG
CAGGTACACG ATGAACTGGT GTTTGAGGTC GACGCCGACA AGGCCGACTC GCTCAAACTC
AAGGTGTGTG AACTGATGGC ACAGGCAGCC TCATTAGATG TCGAGTTGCT GGCCGAAGCT
GGCATTGGCG ATAACTGGGA ACAGGCGCAC TAG
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| Protein sequence | MLAPSSHTEK IDKIMPNIAE NPLILVDGSS YLYRAYYAPP HLTNSKGEAT GAVYGVINML
RSLLNQYKPT QMAVVFDAKG KTFRNEMYAE YKAHRPPMPD DLRTQIEPLH RIIRALGLPL
VCIPGVEADD VIGTIARQAS QEGRAVLIST GDKDMAQLVD DKITLINTMT NTILGPDEVS
EKFGVGPELI IDLLALQGDK ADNIPGLPGV GEKTALAMLQ GVGGVEAILA NPEKMPELGF
RGAKTMPAKI AEHGDMLKLS YELATIKCDV ELEQDWHQLN IQGADRDELI KCYGEMEFKR
WLAEVLDNKS SASSQEEADE VPAPQAIDTQ YDTILTWEAL DEWLKALAAA PLFALDTETT
SLNYMEAKMV GLSFAIEPGK AAYLPLAHDY ADAPEQLDSE QVLAKLKPLL EDPSLLKVGQ
NLKYDMSILA NVGIALKGVA FDTMLESYVF NSVASKHNMD DLALKYLGHK NISFEEIAGK
GVKQLTFNQI PLETAAPYAA EDADITLRLH QHLWPRLQKA SELASVFTDI ELPLVSILSQ
IERQGVLIDS MLLGQQSDEL ARKIDELEQK AYEIAGEPFN LGSTKQLQAL FFEKLGYPVL
KKTPKGAPST AEEVLVELAL DYPLPKIILE HRSLSKLKST YTDKLPLMVD GKTGRVHTSY
HQAIAATGRL SSSEPNLQNI PIRTEEGRRI RHAFVAPEGR KILAADYSQI ELRIMAHLSQ
DKGLLSAFAE GKDIHRATAA EVFDVDFSEV TSEQRRRAKA VNFGLIYGMS AFGLARQLDI
PRHEAQQYID IYFKRYPGVL KYMEDTRAAA AEQGYVSTLY GRRLYLPAIK DRNAMRRQAA
ERAAINAPMQ GTAADIIKKA MINIAQWIET ETQGEITMIM QVHDELVFEV DADKADSLKL
KVCELMAQAA SLDVELLAEA GIGDNWEQAH
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