Gene Shew_3709 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3709 
Symbol 
ID4921221 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4413736 
End bp4414929 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content57% 
IMG OID640165331 
Product2-amino-3-ketobutyrate coenzyme A ligase 
Protein accessionYP_001095834 
Protein GI127514637 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0156] 7-keto-8-aminopelargonate synthetase and related enzymes 
TIGRFAM ID[TIGR00858] 8-amino-7-oxononanoate synthase
[TIGR01822] 2-amino-3-ketobutyrate coenzyme A ligase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.556629 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCAACGA CCTCATTCTA CGATCAAATC AATCAGCAGC TGGCTGAAGT TAAAGCGGAA 
GGCTTATACA AGAGCGAGCG CGTTATTGCC TCTCCTCAGA AGACTGAAAT CGAAGTCAAC
GGCCACGAAG TGATGAACTT CTGCGCCAAC AACTACCTTG GCCTGGCAAA TCATCCCGAG
CTGATCACCG CGGCGCAGCA GGGCCTGAGC GATCACGGCT TCGGCATGGC GTCTGTGCGC
TTCATCTGTG GTACCCAAGA TATTCATAAA CAACTCGAAG CCAGCCTGAG CGAATTCCTC
GGCATGGAAG ACACTATTCT TTACTCTTCT TGCTTCGATG CGAACGCCGG TCTGTTCGAG
ACCCTGCTGG ACGCCGAAGA CGCCATCGTC TCAGATGCCC TGAACCATGC CTCTATCATC
GACGGTGTAC GTCTGTGTAA GGCCAAGCGT TTCCGCTATG CCAACAACGA CATGGCCGAT
CTGGAGACCC AACTGCAGGC GGCAAAGGCA GCCGGTGCCC GTCATATCTT GATCGCCACC
GACGGTGTGT TCTCAATGGA TGGCGTGATC GCCAACCTCA AAGGCGTCTG CGATCTAGCC
GATAAATATG GCGCCCTGGT CATGGTGGAT GACTCTCACG CCGTGGGCTT TATCGGTCAA
AACGGCCGCG GTACCCACGA GTATTGCGAC GTGATGGACA GAGTCGACAT CATCACGGGC
ACCCTGGGCA AGGCCCTGGG CGGCGCATCG GGTGGATTCA CCTCGGCGAA GAAAGAGGTC
GTCGACTGGC TACGTCAACG CTCGCGTCCT TACCTCTTCT CTAACTCGCT GGCCCCTTCT
ATCGTCACCG CCTCGATTCA CGTGCTGGAG ATGCTAAAGT CAGGCCAGGC ACTGCGCGAA
GCCGTATGGG AAAACAGCCG TTACTTCCGC GAGAAGATGA CTGCGGCAGG CTTTACCCTG
GGCGGCGCCG ACCACGCCAT CATCCCTGTG ATGATTGGCG ATGCCAAGCT GGCCAGCGAC
TTTGCTAACC GTCTGTTGGA AGAGAACATC TATGTGATCG GCTTCTCCTT CCCTGTGGTA
CCTAAGGGCC AGGCCCGTAT TCGTACGCAG ATGTCGGCCG CTCATACCCG CGAGCAGCTA
GATCGCGCCA TCGATGCCTT CACCCGCATC GCCAAAGAGA TGGGAATTAT CTAG
 
Protein sequence
MATTSFYDQI NQQLAEVKAE GLYKSERVIA SPQKTEIEVN GHEVMNFCAN NYLGLANHPE 
LITAAQQGLS DHGFGMASVR FICGTQDIHK QLEASLSEFL GMEDTILYSS CFDANAGLFE
TLLDAEDAIV SDALNHASII DGVRLCKAKR FRYANNDMAD LETQLQAAKA AGARHILIAT
DGVFSMDGVI ANLKGVCDLA DKYGALVMVD DSHAVGFIGQ NGRGTHEYCD VMDRVDIITG
TLGKALGGAS GGFTSAKKEV VDWLRQRSRP YLFSNSLAPS IVTASIHVLE MLKSGQALRE
AVWENSRYFR EKMTAAGFTL GGADHAIIPV MIGDAKLASD FANRLLEENI YVIGFSFPVV
PKGQARIRTQ MSAAHTREQL DRAIDAFTRI AKEMGII