| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3703 |
|---|
| Symbol | |
|---|
| ID | 4921215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 4407727 |
|---|
| End bp | 4408275 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640165325 |
|---|
| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| Protein accession | YP_001095828 |
|---|
| Protein GI | 127514631 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.902093 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCC TGAATACTTC CATTCCAGAC GTTAAGCTGC TCGAGCCTCA GGTGTTCGGC
GATGAGCGCG GCTGTTTTTT CGAGACATTT CGTCAGCAGT GGTTTAAGGA ACACCTGATG
GATCTCGACT TTGTGCAGGA AAATCAAAGC CATTCGCTGC AGGGCACGCT GCGAGGGCTG
CACTATCAGC TCAGACAGCC TCAGGGCAAG CTGATCCGCG TGGTTAGCGG CGAAATCTTC
GATGTGTGTG TCGATCTACG CCGCACCAGC CCGAGTTTCG GTCAATGGAC TGGGCACCAC
CTGTCGGCAG ACAACAAACA TCAGCTCTGG GTGCCACCCG GGTTCGCCCA CGGCTTCTAT
GTCGTCTCGC CCGAGGCCCA CTGCTTCTAT AAGTGCACCG ACTATTATGC GCCGAATGAT
GAACACAGCA TCCGCTGGGA CGACGACACC TTAGCCATCG ATTGGCCGCT ACTCAGCACA
CAATCGCCAC TCCTGTCGCC CAAGGACAAG GCCGCGGGCA CCTTTGCCGA GGCCGATTAC
TATGAATAG
|
|---|
| Protein sequence | MKILNTSIPD VKLLEPQVFG DERGCFFETF RQQWFKEHLM DLDFVQENQS HSLQGTLRGL
HYQLRQPQGK LIRVVSGEIF DVCVDLRRTS PSFGQWTGHH LSADNKHQLW VPPGFAHGFY
VVSPEAHCFY KCTDYYAPND EHSIRWDDDT LAIDWPLLST QSPLLSPKDK AAGTFAEADY
YE
|
|---|
| |