Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3657 |
Symbol | |
ID | 4921879 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4357510 |
End bp | 4359549 |
Gene Length | 2040 bp |
Protein Length | 679 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640165279 |
Product | oligopeptidase A |
Protein accession | YP_001095782 |
Protein GI | 127514585 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0339] Zn-dependent oligopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.601769 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTAACC CTTTGCTAAG CGGCAGTGAA TTACCGCCAT TTTCGCAAAT CAAACCCGAG CATATTCAGC CAGCCGTCGA GCAGGGGATT GCTAATTGTC GCCAGAAGAT CGATGAGGTG CTCGCCAGTG GCGGTCCCTA CACCTGGGAT AACCTGATCG CACCGCTCGA GCAGGTGGAT GACGAATTGA GCCAGATCTG GTCGCCCGTG TCGCACATGA ACTCTGTGCT CAGCACTGAT GAGTGGCGCG CCGCCCACGA TGCCTGCCTG CCGCTCTTGT CGGAATATGG CACCTATGTG GGTCAGCATC AGGGGCTGTA TCAGGCCTAT AAGGCGCTGA AGGAGTCCGA CGAGTTTGCC CAGCTAAGTC AGGCGCAGCA AACCAGCATC ACCCACAGCC TGCGTGATTT CGAGTTATCT GGTATCGGAT TAAACGATGA AGATAAACAA ACTTATGGAA AACTGGTTAA ACGTTTATCT GAGTTAACCA GTAGCTTCTC TAATCAGCTG TTGGACGCCA CCCAGGCCTG GACCAAGTTG GTGACCGATG AGCAGGAGCT GGCAGGCTTG CCCGAGTCTG CCATTGCCGC AGCCAAGGCG ATGGCCGAGG CCAAAGAGCA GCAAGGTTGG TTGTTTACCC TGGACTTCCC CTCTTACCTA CCCGTGATGA CCTACAGCGA CAACCGTCAG CTGCGGGAGG AGTGCTACCG CGCCTTCGTG ACCCGCGCCT CGGATCAGGG CCCTAACGCA GGTGAGTTCG ACAACGGTCC GCTGATGGAT GAGATCTTAG ATCTGCGTCA TCAGCTGGCT AAACTGCTGG GCTTCGACAG CTTCGCCCAC AAGTCGCTGG CGACCAAGAT GGCCGAGTCG CCTCAGCAGG TGCTGGATTT CCTTAACGAG TTGGCGGCCC GCTCTAAACA GCAGGGACAG AATGAGCTTG CCGAGCTGAC CGCGTTCGCC GAGAAAGAGT TTGGCGTTAT CGAGCTGGCC CCATGGGATC TCACTTATTA TGCCGAGAAA CTCAAGCATC ACAGATACGA GATCTCCCAG GAGCTGCTGC GTCCTTACTT CCCTGAAGAT CGTGTGCTGT CAGGCCTCTT CTATACCGTG TCGCGCCTGT TCGGTCTGAC CATAGAGGAG CAGGAACATT TCGACAGCTG GCACAAAGAT GTGCGCTTCT TCCATATCAA AGATGCCAAG GGCGAGCACA GAGGCAGTTT CTTCCTGGAT CTCTATGCTC GCGAGGGCAA GCGTGGTGGC GCCTGGATGG ACGATTGCCG CGTGCGTCGT CAAACCGCCC ATGGCCTGCA GAAGCCGGTG GCCTACCTCA CCTGTAATTT CAATGCCCCG GTCAATGGTA AGCCTGCGCT GTTTACCCAC GACGAGGTGA CGACTCTATT CCACGAATTC GGTCACGGTA TACATCATAT GCTGACCAAG ATAGACGTGG CGGGCGTATC AGGTATCAAT GGTGTGCCTT GGGATGCGGT GGAGCTGCCG AGTCAGTTCA TGGAAAACTG GTGCTTCGAG GAGGAAGCCC TGGCCGAGAT CTCCGGACAC TTCGAGACCC ATGAGCCATT GCCGAAGGCC ATGCTAGACA AGATGCTGGC GGCGAAGAAC TTTCAGTCAG GCATGATGAT GTTGCGTCAG CTGGAGTTTT CGCTGTTCGA CTTCCGCCTG CACCTGGAAT ATGACCCGGC AGAGGGCGCC CATATTCAGG CCAAGTTGGA TGAGGTGAGA GATCAGGTTG CCGTGGTGAA GGCCGCCGAT TTCAACCGTT TCCAACACAG CTTCGCCCAT ATCTTTGCCG GTGGTTACGC CGCGGGTTAC TACAGCTACA AGTGGGCCGA GGTGTTGTCG GCCGATGCCT TCTCGCGCTT TGAGGAAGAG GGGATCTTCA ACGCCGATAC CGGTCGCAGC TTCCTGGAGA ACATTCTCGA GATGGGTGGC AGCCTGGAGC CGATGGAGCT GTTTAAGCGC TTCAGAGGCC GTGAGCCAGA GATCGACGCC CTGCTGAGAC ACTCGGGCAT TCAAGGCTAA
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Protein sequence | MSNPLLSGSE LPPFSQIKPE HIQPAVEQGI ANCRQKIDEV LASGGPYTWD NLIAPLEQVD DELSQIWSPV SHMNSVLSTD EWRAAHDACL PLLSEYGTYV GQHQGLYQAY KALKESDEFA QLSQAQQTSI THSLRDFELS GIGLNDEDKQ TYGKLVKRLS ELTSSFSNQL LDATQAWTKL VTDEQELAGL PESAIAAAKA MAEAKEQQGW LFTLDFPSYL PVMTYSDNRQ LREECYRAFV TRASDQGPNA GEFDNGPLMD EILDLRHQLA KLLGFDSFAH KSLATKMAES PQQVLDFLNE LAARSKQQGQ NELAELTAFA EKEFGVIELA PWDLTYYAEK LKHHRYEISQ ELLRPYFPED RVLSGLFYTV SRLFGLTIEE QEHFDSWHKD VRFFHIKDAK GEHRGSFFLD LYAREGKRGG AWMDDCRVRR QTAHGLQKPV AYLTCNFNAP VNGKPALFTH DEVTTLFHEF GHGIHHMLTK IDVAGVSGIN GVPWDAVELP SQFMENWCFE EEALAEISGH FETHEPLPKA MLDKMLAAKN FQSGMMMLRQ LEFSLFDFRL HLEYDPAEGA HIQAKLDEVR DQVAVVKAAD FNRFQHSFAH IFAGGYAAGY YSYKWAEVLS ADAFSRFEEE GIFNADTGRS FLENILEMGG SLEPMELFKR FRGREPEIDA LLRHSGIQG
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