| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3634 |
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| Symbol | |
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| ID | 4922387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4332191 |
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| End bp | 4334554 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640165256 |
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| Product | RNA-binding S1 domain-containing protein |
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| Protein accession | YP_001095759 |
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| Protein GI | 127514562 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.557462 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAATA TTGCAAAAAT CATCGCTCAG GAACTTAATG TTCGTGAGCA GCAAGTGACG
GCAACTATCA CTCTATTGGA TGACGGCGCG ACGGTTCCCT TCGTGGCGCG TTATCGTAAA
GAGGTCACAG GTGGTTTAGA CGATACCCAA CTGCGCACTC TGTATAGCCG TCTGGGCTAT
CTGCGCGAAC TCAACGATCG CCGTCAGGTG ATCCTCTCCA GCATTCAGGC CCAGGGTAAG
CTGACCGCCG AGCTGCAGGC CGCCATAGAT CAGGCCGACA GCAAGACGCG CCTGGAAGAT
CTCTATCTGC CCTACAAGCC TAAGCGTCGT ACCAAGGGAC AGATCGCCAT CGAGGCCGGT
ATCGAGCCCC TGGTGGATCG TTTGCTCAGT GATCGTCAGG CAGATATCGA GGCGCTGGCG
AGCGAGTACC TCAATGCCGA GGCGGGTTTA GATGAGGTGA AGGCGGTGCT CGATGGCGCG
CGCTTCATCC TGATGGAACG TTTCGCCGAA GACGCCGAGC TGCTGCAGAA GGTGCGCCAA
CACCTGACCC AGATCGCCGT GCTCGAGAGC CATGTGGTGA AGGGTAAGGA GAAAGAGGGT
GCCAAGTTCA GAGACTATTT CGAGCACAGC GAGAAGCTGA TGAATGTGCC TTCGCACCGT
GCCCTGGCCA TGTTGCGTGG TCGCAACGAG GGCGTGTTGA GCCTGAGTAT GAATGCGGAC
CCGGATAGCG AGGCCAAGTC AGGCAGTTAC TGCGAGGTGA TTATTGCCGA TCACTTTAAC
CTCAAGCTGA GTGATTCCGC CGTGGATCAG TGGCTTAAGC TGGTGGTCAC CTCTACCTGG
CGCATCAAGA TCGCGCTGCA GATGGAGACT GAGTTTATCG CCAAGCTGCG CGAGCGTGCC
GAGACAGAGG CGATCAATGT CTTCGCCCGC AACCTGGGCG ATCTGCTGAT GGCGGCGCCT
GCCGGTGCCA AGGCGACGCT GGGCCTGGAC CCAGGCCTGA GAACTGGCGT CAAGGTGGCC
ATAGTCAACA ACACGGGCAA GTTGATGGCT CACACCACCA TCTTCCCCCA TGCACCGCAA
AACCAGTGGG ACAAGTCGAT CCGTACCCTG GCGAATTTAG TGAAGATGCA TAAGGTGGAG
CTGATCGCCA TTGGCAATGG CACCGCCTCA CGTGAGACCG ACAAGCTGGC GGGCGAGCTG
ATTGCCGAGT TGAAGAGCGA GCTGCCGACA CTCACCAAGA TCATGGTGAG CGAGGCGGGC
GCCTCCGTCT ATTCCGCCTC TGAGCTGGCG GCGGAGGAGT TCCCCGAGCT GGACGTCTCG
ATTCGCGGCG CCGTCTCTAT CGCCCGTCGC CTGCAGGATC CGCTGGCGGA GCTGGTGAAG
ATCGAACCTA AGTCTATCGG CGTGGGTCAG TATCAGCATG ACGTGAGTCA GAGTCAGCTG
TCACAATCCC TCGAGGCTGT GGTGGAAGAC TGTGTAAACG GCGTGGGTGT GGATCTCAAC
ATGGCCTCCA TGCCGCTGCT GACTCAGGTG GCTGGCCTGA ACAAGACGCT GGCACGCAAT
ATCGTCGAAT ATCGCGACCA GAATGGTCAG TTTACCTCGC GTAAACAACT GCTTAAGGTG
CCGCGTCTCG GCCCCAAGGC ATTCGAGCAG GCGGCCGGTT TCCTGCGTAT TCGTGAGGGT
GACAACCCGC TGGATGCCAG CGCGGTACAC CCAGAGACCT ATGCCTTGGT TGAGTCTATC
GCCAAGGCGC AGCAGCAGGC GGTGGATGCC CTGATAGGCA ACACAGATCT GCTTAAGCAG
ATCGATGCCA AGGCGTTCGT GACCGAGGAG TTTGGTCTGC CGACCATAGA AGATATTCTC
AGCGAGCTGG ATAAGCCGGG TCGTGATCCC CGCGGCGAGT TTAAGACTGC CGTGTTTAAG
GAAGGGGTTG AGGAGATCAA AGATCTTAAG GTGGAGATGA TCTTAGAGGG CGTGGTGACC
AATGTCACCA ACTTCGGCGC CTTCGTCGAT ATCGGCGTGC ATCAGGATGG CCTGGTGCAT
ATCTCGTCGC TCACCGACAA GTTTGTCAGC GATCCCCACA CAGTGGTGAA GGCGGGCGAC
GTGGTTAAGG TCAAGGTGAT GGAGGTCGAC GCCGAGCGTA AGCGTATCAG CCTGACCATG
CGTCTGGACG AGAAGCCGGG CGAGAAGCAA ATGTCTCACC AAGGCGGCAA GGGCCAGGCG
AAAGCGGGCC AAGGCAAGGG ACATCAAGGT AAAAGCCCAC AGGGCAAGAG CCAGGCTAAG
GGCCAGTATA AGCAGCCTAA GGCGCCGGCC AACGCGGCCA TGGGTAACGC CTTTGCCGAT
GCCTTCGCCA AACTGAAGAA GTAG
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| Protein sequence | MQNIAKIIAQ ELNVREQQVT ATITLLDDGA TVPFVARYRK EVTGGLDDTQ LRTLYSRLGY
LRELNDRRQV ILSSIQAQGK LTAELQAAID QADSKTRLED LYLPYKPKRR TKGQIAIEAG
IEPLVDRLLS DRQADIEALA SEYLNAEAGL DEVKAVLDGA RFILMERFAE DAELLQKVRQ
HLTQIAVLES HVVKGKEKEG AKFRDYFEHS EKLMNVPSHR ALAMLRGRNE GVLSLSMNAD
PDSEAKSGSY CEVIIADHFN LKLSDSAVDQ WLKLVVTSTW RIKIALQMET EFIAKLRERA
ETEAINVFAR NLGDLLMAAP AGAKATLGLD PGLRTGVKVA IVNNTGKLMA HTTIFPHAPQ
NQWDKSIRTL ANLVKMHKVE LIAIGNGTAS RETDKLAGEL IAELKSELPT LTKIMVSEAG
ASVYSASELA AEEFPELDVS IRGAVSIARR LQDPLAELVK IEPKSIGVGQ YQHDVSQSQL
SQSLEAVVED CVNGVGVDLN MASMPLLTQV AGLNKTLARN IVEYRDQNGQ FTSRKQLLKV
PRLGPKAFEQ AAGFLRIREG DNPLDASAVH PETYALVESI AKAQQQAVDA LIGNTDLLKQ
IDAKAFVTEE FGLPTIEDIL SELDKPGRDP RGEFKTAVFK EGVEEIKDLK VEMILEGVVT
NVTNFGAFVD IGVHQDGLVH ISSLTDKFVS DPHTVVKAGD VVKVKVMEVD AERKRISLTM
RLDEKPGEKQ MSHQGGKGQA KAGQGKGHQG KSPQGKSQAK GQYKQPKAPA NAAMGNAFAD
AFAKLKK
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