| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3618 |
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| Symbol | |
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| ID | 4922404 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4314264 |
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| End bp | 4315835 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640165240 |
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| Product | general secretory pathway protein E |
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| Protein accession | YP_001095743 |
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| Protein GI | 127514546 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.394925 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGATA TCCAAGCCAC GCAAAACGAG GAACTGGCCC AGGTAACGAG TGAACTCGGG
CTAGCCTCGG AGGCCGAATC CGACGAGGTC TTTCACTCAA GCAGCCGGGA TCGTCTGCCC
TTCGCCTTCG CCCACAGATT CGAGTTGGTG CTGGAGAAGG ACGACGAAGC CGGATTAACC
CTGTACCACA CAGTCAACAC GCCTATCGAC GCTATGTTGG AGGTGCGCCG TTACACAGGA
AAAGAGCTGG CACTGGCGCA GCTGGAGCCC TCTGTGTTCG AGGCCAAGCT GACTCAGGTC
TATCAGGCCA ACTCTTCCGA GGCACAGCAG CTGATGGAAG ATATCGGCAA CGAGATGGAT
CTGTTTACTC TGGCCGAGGA GCTGCCACAG ACAGAGGATC TGCTTGAGGG TGACGACGAT
GCACCTATCA TCAAGCTGAT CAACGCGCTC CTGTCCGAGG CGATCAAAGA GGAAGCCTCG
GATATCCATA TCGAGACCTA CGAGAAGCAG CTGGTGGTGC GTTTCCGCGT CGACGGCGTG
CTCAAAGAGG TGCTCAAGCC CAATCGTAAG CTCTCCTCGC TATTGGTTTC GCGTATCAAG
GTAATGGCGC GTCTGGATAT CGCCGAGAAG CGGGTGCCGC AAGATGGCCG CATCTCGCTG
CGTATCGCAG GTCGAGCGGT GGACGTGCGT GTCTCGACCA TGCCTTCCAG CCACGGCGAG
CGCGTGGTGC TGCGTCTGCT GGATAAGAAT GCCGGCAACC TGGATCTTAA ACAGCTGGGG
ATGACAGATG AGATACGTCA TCAGTTCGAC GAACTGATCC GTAAGCCCCA TGGCATCATC
CTGGTTACAG GTCCTACGGG CTCGGGTAAG AGTACCACAC TGTATGCGGG TCTGACCGAG
ATCAACGCCA TCGACACTAA CATTCTGACG GTCGAAGACC CGATAGAATA TGAACTGCCC
GGCATAGGCC AGACCCAGGT CAATACCAAG GTCGACATGA CCTTCGCCCG TGGCCTGAGG
GCCATACTGC GTCAAGACCC GGATGTGGTG ATGATAGGTG AGATCCGTGA TCTGGAAACC
GCGCAGATCG CGGTGCAGGC CTCGCTCACG GGTCACTTGG TTATCTCTAC CCTGCATACC
AATACCGCCT CGGGCGCTAT CACGCGTCTG CAGGACATGG GCGTCGAGCC CTTCCTGGTA
TCCTCGAGTC TGCTCGGGGT GCTGGCGCAG CGCCTGATCC GTACCCTGTG CCCTAGCTGT
AAGACAGAGC ACACGCCGGA CCTGCGTGAG CGCGAGCTGC TCGGGATCAG CGAAGACGAT
CCACGCACCA TCTACCGGGC GACAGGTTGT TCGGCCTGTG GCCACAACGG CTACCGTGGC
CGTACCGGTA TCCACGAGCT GCTGCTGGTA GACGACTATG TACGCGAGCT TATCCACACA
GGACGCGGCG AGCTGGCCAT TGAGAAGCAT ATTCGTAAGA CGGTACCTAG CATTCGCCAT
GACGGCATGA TCAAAGTCCT CGCCGGGGTG ACTACGCTGG AAGAAGTGCT GCGCGTCACT
CGCGAGGAGT AG
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| Protein sequence | MSDIQATQNE ELAQVTSELG LASEAESDEV FHSSSRDRLP FAFAHRFELV LEKDDEAGLT
LYHTVNTPID AMLEVRRYTG KELALAQLEP SVFEAKLTQV YQANSSEAQQ LMEDIGNEMD
LFTLAEELPQ TEDLLEGDDD APIIKLINAL LSEAIKEEAS DIHIETYEKQ LVVRFRVDGV
LKEVLKPNRK LSSLLVSRIK VMARLDIAEK RVPQDGRISL RIAGRAVDVR VSTMPSSHGE
RVVLRLLDKN AGNLDLKQLG MTDEIRHQFD ELIRKPHGII LVTGPTGSGK STTLYAGLTE
INAIDTNILT VEDPIEYELP GIGQTQVNTK VDMTFARGLR AILRQDPDVV MIGEIRDLET
AQIAVQASLT GHLVISTLHT NTASGAITRL QDMGVEPFLV SSSLLGVLAQ RLIRTLCPSC
KTEHTPDLRE RELLGISEDD PRTIYRATGC SACGHNGYRG RTGIHELLLV DDYVRELIHT
GRGELAIEKH IRKTVPSIRH DGMIKVLAGV TTLEEVLRVT REE
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