| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3599 |
|---|
| Symbol | |
|---|
| ID | 4922504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 4296340 |
|---|
| End bp | 4298043 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640165221 |
|---|
| Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
|---|
| Protein accession | YP_001095724 |
|---|
| Protein GI | 127514527 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
|---|
| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATTG AAAAAACCGC CGAATTAAAC CTTCTTTGGG GCTCGCTAAT CCTCGAGGAG
CTGGCACGCC TTGAAGTGCA ACATGTCTGC ATGGCGCCCG GCTCTCGCTC GACCCCACTC
ACCCTGGCGG CTGCCAAACA GACCAAGCTC AAACAGCATC TTCATTTCGA TGAGCGTGGC
CTGGGCTTTC TCGCCCTGGG ACTGGCCAAG GCCAGCCGCG CCCCCGTCGC CATCATCACC
ACCTCGGGCA CAGCCGTTGC CAACCTCTAT CCGGCCATAG TCGAGGCCTG GCTGACCCAG
GTACCGCTAA TCGTCCTCTC CGGCGATCGC CCGCCAGAGC TACTGGGCTG CGGCGCCAAT
CAGGCGATAG TGCAGCCGGC CATCTTTGCC GACTATGCCA AACAGGTCAA TCTGCCGACA
CCGGATATGG CGATACCGCC CCAGGCGCTG CTCACCCTGC TGGATGAGTC GGTTGCCAAC
GCCAAGGGGC CGATACACGT CAACTGCATG TACCGAGAGC CCCTCTATCC GGGTTCCATG
AGCGCCGATT TCACCCACTA CCTCAGCCCG CTGGGCAACT GGCAACATAG CGCCCTGCCC
TATAACCAGT TTGCCGACGC CCAGCTGGTC AGCGCGCCGA CATCCGATGC CCTGGCCCGC
TTCGTTCATG GCAAGGGCGT GATCATCGCC GGCACCCTGG CGCCCGAGCA GCAACCCGAG
CAGCTTATCG AACTGGCACA GAAGCTCGGC TGGCCGCTGC TGACCGACGC CCAGTCTCAG
CTGAGACAAC ATGGCGCGGC AATCGGCAAC ATAGATCAAC TCCTGCTGCA GCCCAAGGCC
AAGGCGCTGC TGCAGGAAGC CGACACTGTG CTGGTGTTCG GCGGACGTCT GCTGTCTAAA
CGCCTGATTA GCTATCTTAG CGAGCAAAAG TGGAAACGTT ACTGGCAGGT GCTGCCCCAG
CAGACCCGGC TCGATCCTAG CCATAGCGCC AAGCAGGTGT GGATAAGCCC ACTTGCCGCC
TTTGCTCAAC TGCCCTGGCC GAGATCTTCC GAGGCTAACT GGGCGCTGCA ACTGATAGAG
GCCAACGAGC AACTGGCCAC CCTGTTCCAG CAACAGATTG ACGACGCCGA GTTTGGCGAG
GCTCAGGTGG TGCGCACCAT CGCGGGCCGT GGTGAGCAAC AGCTGTTTAT CGGTAACAGC
CTGCCGGTAC GCCTCTACGA CATGTACGCC CCCATCACAC CCATCGCGCC TCGCGTCTTT
ACCAACCGCG GCGCCTCGGG TATCGATGGC CTGCTGGCCA CCGCCTGCGG GATAGCGGCC
CACAAGGCCA GCTCGACCAC GCTTGTCATC GGCGACCTGT CACAGCTGCA CGATCTCAAC
TCCCTGGCGC TGGCGGCGAA GCAACAGGGC ACTCTGGTGA TAGTCATACT CAACAACGAC
GGCGGCAACA TCTTCAATCT ACTGCCCGTG CCCGATGAGA AGCTACGTAG CGGCTACTAT
CGTCTGGCCC ACGGCCTGGA GTTTGGCTAT GGCGCGGCCA TGTTCGGCCT GCCCTATAAT
CGCGTCGAGG ATATAGTGAG TTTCAACGAG GCCTACGACG ATGCCCTCGC CTACCCGGGC
GCCTCTGTCA TCGAGGTCTG TGTGGCGCAA GATCAAGCCA GCGAACAGAT CGCCCGCCTC
GCCGCCTGGA TCAAGCAAAG CTGA
|
|---|
| Protein sequence | MQIEKTAELN LLWGSLILEE LARLEVQHVC MAPGSRSTPL TLAAAKQTKL KQHLHFDERG
LGFLALGLAK ASRAPVAIIT TSGTAVANLY PAIVEAWLTQ VPLIVLSGDR PPELLGCGAN
QAIVQPAIFA DYAKQVNLPT PDMAIPPQAL LTLLDESVAN AKGPIHVNCM YREPLYPGSM
SADFTHYLSP LGNWQHSALP YNQFADAQLV SAPTSDALAR FVHGKGVIIA GTLAPEQQPE
QLIELAQKLG WPLLTDAQSQ LRQHGAAIGN IDQLLLQPKA KALLQEADTV LVFGGRLLSK
RLISYLSEQK WKRYWQVLPQ QTRLDPSHSA KQVWISPLAA FAQLPWPRSS EANWALQLIE
ANEQLATLFQ QQIDDAEFGE AQVVRTIAGR GEQQLFIGNS LPVRLYDMYA PITPIAPRVF
TNRGASGIDG LLATACGIAA HKASSTTLVI GDLSQLHDLN SLALAAKQQG TLVIVILNND
GGNIFNLLPV PDEKLRSGYY RLAHGLEFGY GAAMFGLPYN RVEDIVSFNE AYDDALAYPG
ASVIEVCVAQ DQASEQIARL AAWIKQS
|
|---|
| |