| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3562 |
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| Symbol | |
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| ID | 4922697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4253687 |
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| End bp | 4254577 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640165184 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001095687 |
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| Protein GI | 127514490 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATAC CAATCAAAAC CTTACATTAT TTTCTCACCC TGGTTGAAAC GGGAAATTTT
ACCCGGGCGG CGGAAAAGTC TTTTATCACC CAGCCAACCC TGAGCAAGAT CATCCAGCGA
CTGGAGGAAA ATCTCGGCCA GCAGCTGCTG CACAGGAATA ATCAGAAGAT AGAGCTAACC
CAGGCAGGCA TACTGCTGGA GAACAGCGCC CGGGAGATCT TGGGGCAGTG GCACAGGCTG
CAGGAAGACC TTACCAACCT GAGCGGCCTC AAGTCTGGAC ACCTGCGCCT TGGGGTCTGC
CCCATGATGA GCAGCCTGAT CATCGACCTG CTCACCGCAT TTCGTCAACA ATATCCGGGC
ATAGAACTAC AGATGTATGA ATATGGCGGC TTCGGCTGCG AGCAGGCGCT GCTTAACAAC
AGCCTGGATA TCGCCTTCAC CGCCCTGCCT ACCACCCATG ATATCGAGCT GGCCAACCGC
GCCCTCACCC GCTATCCGCT GCTGGCCTGC CTGCCCAAGG ACCATGCCCT CGCCCAACAG
GAAGCGGTGA CCTGGCAGGA CTTCGAGGCC TACCCCTTCA TCCTCTACAA CGAGGACTTC
TCGTTGGCCA AGCTGATCAC CCGCCTGAGT CACAAGGCTG GCGTGCAGCT CAACATCGCC
TTTCGCAGTG GCCAGTGGGA CTTTCTGGCG ACCATGGTGG AGGCCCAGAT GGGGGTCGCT
ATACTGCCCG AGCCTATCTG CCACAAGTTG CAGGGCAGCG AGCTGGTCTT CAAGCCTATT
CGTCCCAATC TCACCTGGGA TCTGGCGCTG ATCTGGCGCA AAGACCTGCC GCTGACACCG
GCGGCCCAGG CGCTCTTGGA TCTCAGCGAG CAGGCCCATC TGCACCCTTG A
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| Protein sequence | MNIPIKTLHY FLTLVETGNF TRAAEKSFIT QPTLSKIIQR LEENLGQQLL HRNNQKIELT
QAGILLENSA REILGQWHRL QEDLTNLSGL KSGHLRLGVC PMMSSLIIDL LTAFRQQYPG
IELQMYEYGG FGCEQALLNN SLDIAFTALP TTHDIELANR ALTRYPLLAC LPKDHALAQQ
EAVTWQDFEA YPFILYNEDF SLAKLITRLS HKAGVQLNIA FRSGQWDFLA TMVEAQMGVA
ILPEPICHKL QGSELVFKPI RPNLTWDLAL IWRKDLPLTP AAQALLDLSE QAHLHP
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