| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3516 |
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| Symbol | |
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| ID | 4922968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4201430 |
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| End bp | 4203148 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640165138 |
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| Product | glycosyl transferase family protein |
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| Protein accession | YP_001095641 |
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| Protein GI | 127514444 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis
[COG4261] Predicted acyltransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCTGG CATTAGTCAT CCCCAACTAC AACCATCGCC AGGCGATCAA GGCTACCCTT
GCACGCCTGG AGCCCTTGGG ACTCACCTGT TATCTGGTTA ACGATGGCAG CGACGACGAG
ACCCGACACC TGCTCTGCCA GCTGGCGGCG CAGCACGACT GGGTGCGCCT GCTGCATCAT
CCCTTCAACC GGGGCAAAGG CGCCGCGGTG ATGACGGGCC TCAGGGCTGC CTATGCCGAT
GGTTTTAGCC ATGCGCTGCA GGTAGACGCC GACGGTCAAC ACGATCTTGA CGATATACCT
AAGATGATCG AGACGGCTAA GGCTCAGCCC CATGCGCTGA TCTCCGGCCT GCCGCAATAC
GATGAGTCCG TGCCCAAGGG GCGTCTCTAT GGCCGCTATC TCACCCACTT CTGGGTCTGG
GTCGAGACCC TGAGCCTGGA TATTCGAGAC TCCATGTGCG GTTTTCGCGT CTACCCTCTG
GCCGCCACCG AGCAGCTGTT TCTCAACGAG GCACTGGGCG AGCGCATGGA CTTCGATATC
GAGGTACTGG TCAAGCTCTA CTGGCAGGGC GTCGAGGTAA AACACCTGCC GACAAGGGTG
ATCTACCCAG AAGATGGCAG CAGCCACTTC CAGGGCTTCA AAGACAATGT GCGCATCTCC
GCCATGCACA GCAAACTCTT CTTCGGCATG TTAAGACGCA TGCCACAGCT ACTGCGCCAC
AAGCGCAGCC GCCCCAAGAC GGTGAAGCAC TGGTCTCGCA TGGGCGAGCG CGGCAGCTAC
TGGGGCATCA AGCTGTTGGC CACCAGTTAT AAGCTGGGCG GCCACTGGCT ATGCCGCGCC
ATCATGTATC CGGTGATCTG CTACTTCTTC GCCACCGGCC GCACAGCTCG GCACGCCAGC
CAGACTTTCC TGCGTCAGGT GCAGCGACTC GAACCCAAAC ATCCGGATCT CCAGGGCGAG
ATAAACTGGC GCCACAGCCT CAAGCACTTC ATCGCCTTCG GCAATGCGGC ACTGGATCGT
ATCGACGCTT GGTGCGATCG CATCAAACTC AGCCAGGTCG ACTTTCCCGA CCGCGAGGTA
CTCGCCAAGC CGCTGGCCCA GGGACAAGGT GCCGTGCTGC TGGTCTCCCA CCTGGGTAAC
CTGGAGCTTT GCCGCGCCAT ATCGATTCAC CAGCGCAAGG TGAAGGTCAA CGTCATGGTG
CTGACCCAGA ACGCGGAGAA CTTCAACCGG GTACTGAAAC AGCTAAACCC TGACAGTGCC
CTGAACCTGA TCCAGGTGAC CGAACTGGGC CCCAGCACCT CTATGCTGTT GCAACAGAAG
ATAGAGCAGG GAGAACTCGT GGTGATCGCC GGCGATCGCA CCTCCACCAG CAGTGAAGGC
CGGGTGTTTT ATGCCCCCTT CATGGGCAAG GCAGCGCCTT TCCCCCAAGG TCCGTTTATT
CTGGCCAGCC TGCTGGACTG CCCCGTGTAC CTGATGTTCT GCCTCAGGGA AAACGGCCGC
TACCGGGTGC ACGTAGAGCA CTTTGCCGAC ACCCTCAAGG GGCCGCGTGC CGGCCGCATG
GAACGACTAC AAGCAGCGGT GAATCGTTAC GCCGAGCGTC TGGAACACTA CGCCCGCCGT
GCACCGCTGC AATGGTTTAA CTTTTTCGAT TTTTGGCGCA AGGACGATGA ACTCCTGCGC
GAGGCCAAGC CTCAAACGCC TAACAGGACA GAGAAATAG
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| Protein sequence | MQLALVIPNY NHRQAIKATL ARLEPLGLTC YLVNDGSDDE TRHLLCQLAA QHDWVRLLHH
PFNRGKGAAV MTGLRAAYAD GFSHALQVDA DGQHDLDDIP KMIETAKAQP HALISGLPQY
DESVPKGRLY GRYLTHFWVW VETLSLDIRD SMCGFRVYPL AATEQLFLNE ALGERMDFDI
EVLVKLYWQG VEVKHLPTRV IYPEDGSSHF QGFKDNVRIS AMHSKLFFGM LRRMPQLLRH
KRSRPKTVKH WSRMGERGSY WGIKLLATSY KLGGHWLCRA IMYPVICYFF ATGRTARHAS
QTFLRQVQRL EPKHPDLQGE INWRHSLKHF IAFGNAALDR IDAWCDRIKL SQVDFPDREV
LAKPLAQGQG AVLLVSHLGN LELCRAISIH QRKVKVNVMV LTQNAENFNR VLKQLNPDSA
LNLIQVTELG PSTSMLLQQK IEQGELVVIA GDRTSTSSEG RVFYAPFMGK AAPFPQGPFI
LASLLDCPVY LMFCLRENGR YRVHVEHFAD TLKGPRAGRM ERLQAAVNRY AERLEHYARR
APLQWFNFFD FWRKDDELLR EAKPQTPNRT EK
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