| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3506 |
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| Symbol | |
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| ID | 4923058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4193115 |
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| End bp | 4193711 |
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| Gene Length | 597 bp |
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| Protein Length | 198 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640165128 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001095631 |
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| Protein GI | 127514434 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATAT TACTCGCCGA AGATCAAGCC ATGGTCAGGG GCGCACTGGC CGCGCTCCTC
ACCCTCGAAG GCGACTTTGA GGTGATCCAG GCCTGTGACG GTGACCAAGC CCTGAGCCTG
CTCAAGCAAC AGGAGTTCGA CCTGCTACTG ACCGACATAG AGATGCCAGG CCTCAGTGGC
CTGGAGTTAG CCCAATGGTG TCAAAATCAA GCGGCGCCCA TTAAGGTCAT CATCCTGACC
ACCTTCGGCC GTGCAGGCTA TATCAAGCGT GCCATCGAGG CGGGCGTGGG TGGCTTCTTA
CTCAAGGACG CGCCCTCCGA GACACTGATC CAGGCAATTA ACGCCGTCAG CCGCGGCAAG
CGCATCATAG ATCCCGAACT GGCCATCATG GCCGTCGGCG AACAAGACCC GCTGAACGAT
AAGGAACGCC GGGCGCTCAG GCTCGCCAGC GAGGGACGCT CCAGCGCGGA GATCGCCGCC
AGCCTCTTCA TCGCCGAAGG CACTGTGCGT AACTATCTCT CCGAGGCCAT CGCCAAACTC
AATGCCAGCA ATCGCATCGA CGCCGCTCGC ATCGCCAAGC AAAAGGGCTG GCTGTAG
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| Protein sequence | MKILLAEDQA MVRGALAALL TLEGDFEVIQ ACDGDQALSL LKQQEFDLLL TDIEMPGLSG
LELAQWCQNQ AAPIKVIILT TFGRAGYIKR AIEAGVGGFL LKDAPSETLI QAINAVSRGK
RIIDPELAIM AVGEQDPLND KERRALRLAS EGRSSAEIAA SLFIAEGTVR NYLSEAIAKL
NASNRIDAAR IAKQKGWL
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