Gene Shew_3499 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3499 
Symbol 
ID4923051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4184648 
End bp4186753 
Gene Length2106 bp 
Protein Length701 aa 
Translation table11 
GC content57% 
IMG OID640165121 
Productbifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 
Protein accessionYP_001095624 
Protein GI127514427 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTATCTGT TTGAAGGTCT CAAGGAGTCT GCGTCAAGTT ACTTAGAAGC GACGCAGGTA 
GAATTACTCA AGCAGGCCTA TCAGGTAGCG CGCGATGCTC ATGAAGGGCA GATGCGCACG
AGTGGCGAAC CCTACATTAC CCATCCGGTT GCGGTTGCCC GCATCTTGGC CGATATGCGT
CTCGATCATG AGACACTCAT GGCCGCCCTG CTGCACGACA CCATTGAAGA TACCCCTGTC
ACCAAAGAAG AGCTCTCGGA GCTGTTTGGT GAGTCTGTGG GCGAGCTGGT CGAAGGCGTC
TCCAAGCTGG ACAAGCTAAA GTTCAGAGAC AAGAAAGAAG CTCAGGCGGA AAACTTCCGC
AAGATGATGA TGGCCATGAC CCAGGATATC CGGGTGATCC TCATCAAGCT GGCCGACCGC
ACCCACAACA TGCGCACCCT TGGCGCCCTG CGTCCCGACA AGCGTCGCCG CATCGCCCGC
GAAACCCTGG AAATTTACGC CCCCATCGCC AACCGTCTGG GTATTCACAA TATCAAGACT
GAACTGGAAG ATCTGGGCTT TCAGGCCTAT TACCCCATGC GCTACCGGGT ACTCAAAGAG
GTGGTCAAGT CTGCACGTGG CAACCGAAAA GAGCTGATCC AGAATATCGA AGGCGCTATC
AAGACCCGCC TCGAAGACAC AGGTCTCAAG GGCACGGTCA AGGGCCGAGA GAAAAACCTC
TATTCCATCT ACAACAAGAT GTGTAACAAG GAACTCCAGT TCCAAGAGGT GATGGATATC
TATGCGTTTC GGGTGATCGT CGACTCCATT GACACCTGTT ATCGCGTCAT GGGCGCCATG
CACGGCCTGT ATAAGCCGCG TCCCGGTCGC TTCAAAGATT ATATTGCCAT CCCCAAGGCT
AACGGTTATC AGTCGCTGCA TACCTCGCTA TTTGGTCCAC ACGGCGTACC GGTGGAGATC
CAGATTCGTA CCGAAGATAT GGATCAGATG GCCGACAAGG GGGTTGCGGC CCACTGGCTC
TACAAGGGCG CCGGTTCGGC CCAGCAAGGC ACCACCACTC AGGTGCGTGC CCGCAAGTGG
ATGCAGAGCC TGCTGGAGCT GCAACAGAGC GCCAGCACCT CCTTCGAATT CGTCGAAAAC
TTCAAGACAG AGCTGTTCCC GGAAGAGATC TATGTCTTCA CCCCAGAGGG ACGCATTCTC
GAGCTACCTG TGGGCGCCAC TGCGGTGGAC TTTGCCTACG AGGTGCATAC CGACGTGGGC
AACACCTGTG TCGGCGCGCG GGTCAACCGT CAGGCCTATC CGCTGAGTCA GCCGCTGATT
TCCGGTCAGA CTATCGAGAT CATCACCGCC AAGGGCGCGC GCCCCAACGC CGCCTGGCTC
AACTTCGTGG TGACGGGTAA GGCACGCGCT AAGATCAGAC AGCTGCTCAA GAGCCTCAAA
GAAGACGATG CCGTACTGCT CGGCAAGCGT CTGCTCAACC ACGCCCTGGG CGACATCAAG
CTCAAGGATA TCCCTCAGGA GCAGATCGAT AAGGTGGTGA GCGAGACCAA ACACGCCACC
CTAGATTCCC TGCTGGCCGA CATCGGCCTG GGCAACGCCA TGAGCATAGT GATTGCCCAG
CGTCTCAAGG GCGATCGGGT CGAGCAGCAC GAACATAAAG AATCCAACAT GATGCCGATC
CGCGGCGCCG AAGGCATGCT GGTCTCCTTC GCCAACTGTT GTCGCCCTAT CCCAGGTGAT
GCGGTGATCG CCCATGTGAG TCCGGGTAAA GGCCTGGTGG TGCACATGGA AAGCTGCGCC
AACATCCGCG GTTATCAGGG CGAGCCAGAC AAGTATATTC CTGTGCACTG GGATAACGCC
GAGGGCGTCG AGTTCCAGGC CAACCTGCGC ATCGAGATCG TCAACCACCA GGGCGCGCTG
GCCAAGATCA CCTCTATCGT GGCCGCCGAG GGCTCGAATA TCCATAACCT GAGCACCGAA
GAGCGCGACG GCCGGGTATT CTTGATTAAC TTACGGATCT CGGTCACCGA CCGGGTCCAC
TTAGCCAACG TGATGCGCCG TATCAGGGTA CTGCCGGAAG TGCTGCGCAC ATCGCGTAAT
CGTTAG
 
Protein sequence
MYLFEGLKES ASSYLEATQV ELLKQAYQVA RDAHEGQMRT SGEPYITHPV AVARILADMR 
LDHETLMAAL LHDTIEDTPV TKEELSELFG ESVGELVEGV SKLDKLKFRD KKEAQAENFR
KMMMAMTQDI RVILIKLADR THNMRTLGAL RPDKRRRIAR ETLEIYAPIA NRLGIHNIKT
ELEDLGFQAY YPMRYRVLKE VVKSARGNRK ELIQNIEGAI KTRLEDTGLK GTVKGREKNL
YSIYNKMCNK ELQFQEVMDI YAFRVIVDSI DTCYRVMGAM HGLYKPRPGR FKDYIAIPKA
NGYQSLHTSL FGPHGVPVEI QIRTEDMDQM ADKGVAAHWL YKGAGSAQQG TTTQVRARKW
MQSLLELQQS ASTSFEFVEN FKTELFPEEI YVFTPEGRIL ELPVGATAVD FAYEVHTDVG
NTCVGARVNR QAYPLSQPLI SGQTIEIITA KGARPNAAWL NFVVTGKARA KIRQLLKSLK
EDDAVLLGKR LLNHALGDIK LKDIPQEQID KVVSETKHAT LDSLLADIGL GNAMSIVIAQ
RLKGDRVEQH EHKESNMMPI RGAEGMLVSF ANCCRPIPGD AVIAHVSPGK GLVVHMESCA
NIRGYQGEPD KYIPVHWDNA EGVEFQANLR IEIVNHQGAL AKITSIVAAE GSNIHNLSTE
ERDGRVFLIN LRISVTDRVH LANVMRRIRV LPEVLRTSRN R