| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3481 |
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| Symbol | radC |
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| ID | 4923159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4166717 |
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| End bp | 4167418 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640165103 |
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| Product | DNA repair protein RadC |
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| Protein accession | YP_001095606 |
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| Protein GI | 127514409 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2003] DNA repair proteins |
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| TIGRFAM ID | [TIGR00608] DNA repair protein radc |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000421033 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCGCCGA GACAAGGAGT GTTTATGGCA ATCAAAGATT GGCCTCAGGG AGAGGGGCCC
AGAGAAAAAC TGCTGCGCAG TGGTGTCGCT CAGCTCTCCG ATGCCGAGTT GCTGGCGGTG
CTGCTTAGAA ACGGCCTCAA GGGGCAAAGC GCCGTGTCCC TGGCCAGAGT CATGTTAACC
CACTTCGGTG GCCTCAGGGC GCTGTTTAGC GCCTCCTTGA GTGAGCTGTG TGATATTCAG
GGGATCGGCC CGGTAAAGTA TGCTCAATTG CAGGCAGCCA TCGAGTTAAG CAAGCGGATC
GCGCAAGAAA ATCTACAAAG AGGAAAGATT TTGTCAGATC CTGATTTAAC TCGGGACTAT
TTAATGAGAC AATTGGCGGA TCGTGCCTAC GAAGTGTTTG CCATCTTATT GCTCGATAGT
CAGCATAGGG TGATTCAGTT CGTCGAATTG TTCCGTGGCA CCATAGATTC AGCCTCGGTT
TATCCACGAG AAGTGGTAAG CCTAGTGCTT GAGAAAAAAG CCGCAGCGGT AATTGTGTGC
CACAACCATC CTTCCGGGGG GGCTGAGCCC AGTCATGCTG ATCGGCGAAT TACTGAGCGA
TTGAAATACG CGTTGGCGAC TATAGATGTT TCGCTGCTAG ACCATATGGT TGTAGGCGAT
CGTGAGATAG TTTCGTTTGC AGAGAGGGGA TGGATAGATT GA
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| Protein sequence | MAPRQGVFMA IKDWPQGEGP REKLLRSGVA QLSDAELLAV LLRNGLKGQS AVSLARVMLT
HFGGLRALFS ASLSELCDIQ GIGPVKYAQL QAAIELSKRI AQENLQRGKI LSDPDLTRDY
LMRQLADRAY EVFAILLLDS QHRVIQFVEL FRGTIDSASV YPREVVSLVL EKKAAAVIVC
HNHPSGGAEP SHADRRITER LKYALATIDV SLLDHMVVGD REIVSFAERG WID
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