| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3472 |
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| Symbol | |
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| ID | 4922474 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4156347 |
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| End bp | 4157918 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640165094 |
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| Product | 2-isopropylmalate synthase |
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| Protein accession | YP_001095597 |
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| Protein GI | 127514400 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.817295 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAACC GAGTGATAAT ATTTGATACG ACCTTACGAG ATGGTGAGCA AGCATTAGCG
GCGAGTTTAA CGGTTAAGGA AAAGCTACAG ATAGCACTGT CACTCGAGCG TCTGGGAGTG
GACGTCATGG AGGTGGGATT TCCCGTCTCA TCGCCGGGTG ATTTCGAGTC GGTGCAGACC
ATTGCCCGCA CCATCAAGAA TAGCCGGGTC TGTGCACTTG CCAGGGCGCT TGAGAAAGAT
ATCGACGCCG CGGCCCAGTC CTTGTCGGTG GCGGAGCAGT TCCGTATCCA CACCTTTATC
TCGACCTCGA CCATACACGT GGAGAGTAAG CTTAAGCGCT CCTTCGATCA GGTGCTGGAC
ATGGCGGTCG GTGCGGTGAA ATATGCCCGC CGCTTCACCG ATGATGTGGA GTTCTCCTGT
GAAGACGCCG GTCGTACCCC AATAGATAAC CTGTGCCGCA TGGTCGAGGC CGCCATCAAG
GCGGGCGCCA AGACTATCAA CATTCCCGAC ACAGTTGGTT ATACGGTGCC GAGCGAATTT
GGCGGCATCA TTCAAAACCT GTTCGACAGG GTACCGAATA TCGATCAGGC GGTGATCTCG
GTGCACTGTC ACGACGACTT GGGCTTGTCG GTGGCAAACT CTATTACCGC GGTGCAGCAT
GGGGCGCGTC AGATCGAGTG TACCGTCAAT GGCATCGGCG AGCGCGCCGG TAACTGCTCT
CTGGAAGAGA TCGCCATGAT CATCGCCACT CGCAAGGCCA GCCTGGGGCT GGAGACGGGG
ATCAACGCCA AAGAGATCCA CCGCACCTCT AATCTGGTGA GTCAGCTGTG TAACATGCCG
GTACAGGCCA ACAAGGCGAT CGTCGGCGCC AACGCCTTCA CCCACTCCTC GGGTATCCAT
CAGGATGGCG TGCTGAAGTC ACAAAACACC TACGAGATTA TGACGCCAGA GAGTATCGGC
CTGAACCGCA ACAACCTGAA CATGACCTCC CGCTCCGGCC GCCACGTGAT CAAGCATCGC
ATGGAAGAGA TGGGCTATGG CGAGCAAGAC TATGATATGG ACACCCTGTA CGAGGCCTTC
CTGAAGCTGG CTGACAAGAA GGGGCAGGTG TTCGACTATG ACCTGGAGGC CTTGGTATAT
GTAGAGGCTC AGGCGGAAGA TGAAAACCAC TATGGCTTGC AGCAGCTGGT GGTGCACTCA
GATTCGACTC AGGGACAGGC CACCGCCACA GTGACCCTAA GCATAGACGG CAAGGCGGTA
ACAGAGGCGG CAACGGGTAA CGGCCCGGTC GATGCGGCCT ACAAGGCGAT TGCCCGCGCC
AGCGGCTGTG AGATCAACAT CAGCAGCTAT CAGCTTAGCG CCAAGGGCCA AGGGCAAGAT
GCCCTGGGAC AGGTGGATAT CACCGCCAAG TATCATGATC AGAGCTTCCA TGGTGTGGGC
CTGGCGACCG ATGTGGTCGA GGCCTCGGCA GCGGCGCTGA TCCACGTGAT GAATCTGACC
TGGCGCGCGG ACAAGGTGGC CGAAAACAAG CATAAGTTAA AACAGGCGCG CACCGAGTTA
GGCGGCGTAT AA
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| Protein sequence | MSNRVIIFDT TLRDGEQALA ASLTVKEKLQ IALSLERLGV DVMEVGFPVS SPGDFESVQT
IARTIKNSRV CALARALEKD IDAAAQSLSV AEQFRIHTFI STSTIHVESK LKRSFDQVLD
MAVGAVKYAR RFTDDVEFSC EDAGRTPIDN LCRMVEAAIK AGAKTINIPD TVGYTVPSEF
GGIIQNLFDR VPNIDQAVIS VHCHDDLGLS VANSITAVQH GARQIECTVN GIGERAGNCS
LEEIAMIIAT RKASLGLETG INAKEIHRTS NLVSQLCNMP VQANKAIVGA NAFTHSSGIH
QDGVLKSQNT YEIMTPESIG LNRNNLNMTS RSGRHVIKHR MEEMGYGEQD YDMDTLYEAF
LKLADKKGQV FDYDLEALVY VEAQAEDENH YGLQQLVVHS DSTQGQATAT VTLSIDGKAV
TEAATGNGPV DAAYKAIARA SGCEINISSY QLSAKGQGQD ALGQVDITAK YHDQSFHGVG
LATDVVEASA AALIHVMNLT WRADKVAENK HKLKQARTEL GGV
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