| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3471 |
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| Symbol | |
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| ID | 4922473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4155197 |
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| End bp | 4156291 |
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| Gene Length | 1095 bp |
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| Protein Length | 364 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640165093 |
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| Product | 3-isopropylmalate dehydrogenase |
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| Protein accession | YP_001095596 |
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| Protein GI | 127514399 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.556446 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTATC AAGTCGCGGT ATTGGCCGGT GATGGGATCG GCCCCGAGGT TATGGCCGAA
GCACGCAAGG TGCTAAAGGC GGTGGAAGAG CGTTTCTCGT TGGATATCGA GTATAGCGAA
TATGATGTGG GCGGCGCGGC CATCGACCAT CATGGTTGTC CGCTACCCGA GTCGACCCTG
AAGGGCTGCG AGGAGGCCGA CGCTATCCTA TTCGGCTCGG TAGGTGGCCC TAAGTGGGAA
CATCTGCCTC CAAATGATCA GCCAGAGCGT GGCGCCTTAT TACCGCTGCG GGGGCACTTC
GAGCTGTTTT GTAACATGCG TCCGGCCAAG CTACATGTTG GCCTGGAGCA TATGTCGCCG
CTGCGTAGCG ACATCTCGGC CCAGGGCTTC GACGTGCTTT GCGTGCGCGA GCTGACCGGT
GGCATCTACT TCGGTAAGCC CAAAGGGCGC CAGGGTGAGG GCGAGCAGGA AGAGGCTTTT
GACACCATGC GCTATAGCCG CCGCGAGGTG CGCCGCATCG CCAAGATCGC CTTTGAGGCT
GCTCGAGGTC GTCGCAAGAA GGTAACCTCT GTGGATAAGG CCAACGTACT GGCCTGCTCT
GTGTTGTGGC GTGAAGTGGT TGAAGAGGTG GCCAAGGAGT TCCCGGATGT GGCGCTCGAG
CATATCTATA TCGATAACGC CACCATGCAG CTGCTGCGTC GCCCCTTCGA TTTCGATGTG
ATGCTCTGCT CAAACCTGTT TGGCGACATC ATCTCAGATG AGATCGCCAT GCTGACCGGC
TCCATGGGCT TGCTTTCATC GGTGAGTCTC AACAGCGATG GCTTCGGTCT GTATGAACCT
GCCGGTGGCA GCGCGCCGGA TATCGCCGGC CAAGGCATCG CCAACCCGAT AGCGCAGATC
CTGTCTGCGG CGCTGCTGCT GCGTCATAGC CTCAAGGAAG AAGCGGCGGC CAAGGCGATT
GAAGATGCGG TCGCCAAAGC ATTGAGCGAT GGCTATTTAA CTGGAGAACT CTTGCCCGCG
GATCAGCGTG ACAAGGCAAA ATCAACCCGC GAGATGGGCG ACTATATTGC CCAAGCAGTC
AGAGAGGCAA ACTAA
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| Protein sequence | MSYQVAVLAG DGIGPEVMAE ARKVLKAVEE RFSLDIEYSE YDVGGAAIDH HGCPLPESTL
KGCEEADAIL FGSVGGPKWE HLPPNDQPER GALLPLRGHF ELFCNMRPAK LHVGLEHMSP
LRSDISAQGF DVLCVRELTG GIYFGKPKGR QGEGEQEEAF DTMRYSRREV RRIAKIAFEA
ARGRRKKVTS VDKANVLACS VLWREVVEEV AKEFPDVALE HIYIDNATMQ LLRRPFDFDV
MLCSNLFGDI ISDEIAMLTG SMGLLSSVSL NSDGFGLYEP AGGSAPDIAG QGIANPIAQI
LSAALLLRHS LKEEAAAKAI EDAVAKALSD GYLTGELLPA DQRDKAKSTR EMGDYIAQAV
REAN
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