| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3470 |
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| Symbol | |
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| ID | 4922472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4153797 |
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| End bp | 4155197 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640165092 |
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| Product | isopropylmalate isomerase large subunit |
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| Protein accession | YP_001095595 |
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| Protein GI | 127514398 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
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| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.510231 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.406012 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAGA CACTGTATGA AAAGGTATGG GATAGCCATA TCGTAGCCGC CCCCGAAGGT
GAGGCGCCGC TTATCTATGT CGATCGCCAT CTGGTGCATG AGGTGACCTC GCCCCAGGCC
TTCAGCGGCT TGAAAGTCGC CGGCCGTAAA TTACGGGCGC CAGAGAAGAC CTTTGCCACC
ATGGATCACA ACACCTCGAC CAAGAGCGCC AGCCTGGATG CGCTCAGCCC CATGGCGCGC
ACTCAGGTGG AGACGCTGGC ACAAAACTGT AAAGAGTTTG GTGTGCGTTT ATACGATATT
CATCATAAGA ATCAGGGGAT TGTCCACGTG ATGGGCCCCG AGCTTGGTAT CACCCTGCCG
GGCACTGTGA TTGTGTGCGG CGACTCGCAC ACGGCGACCC ATGGCGCCTT TGGCGCCCTG
GCCTTCGGCA TCGGCACCTC TGAGGTGGAG CATGTGATGG CCACCCAAAC CCTGCGCCAG
CTGAAAGCCA AGACCATGAA GATTGAGGTG CGCGGCCTGG TGGCCGATGG GATCACCGCC
AAAGATATCG TGCTGGCCAT CATAGGCAAG ATAGGCATGG ATGGCGGCAC GGGTTATGTG
GTGGAGTTCT GCGGCGAGGC GATTGCCGCC CTGTCGATGG AAGGGCGCAT GACAGTCTGT
AACATGGCGA TCGAGATGGG CGCCAAGGCG GGCATGATAG CGCCGGATCA GACCACCATT
GATTACCTAG AAGGCCGTGA GTTTGCGCCT AAGGGCGAAG CTTGGCAGCA GGCGGTCGCC
GCTTGGAAGG CGCTGAAGTC GGACGAGGAT GCCATGTTCG ATGCCCATGT GGTGCTGGAG
GCGAGCGATA TCGCGCCTCA GCTGACCTGG GGCACTAACC CAGGCCAAGT GGTGGCGATC
GATCAGTGCG TGCCTAACCC TGAAGATGAG ACAAACCCGA CGGTGAAGGC GAGTATCGAG
AAGGCACTGG ACTATGTGGC GCTCACCCCT GGCACTCAGA TGACTGACGT GAGCATTAAC
AAGGTGTTTA TCGGCTCCTG TACCAATTCG CGCATCGAAG ATCTGCGCTC GGCGGCTCAG
CAGGCCAAGG GGCGTAAAGT GGCCGCCGGT GTCACGGCTA TCGTGGTGCC GGGCTCAGGC
TTGGTGAAGG AGCAGGCGGA GGCGGAAGGC CTGGATAAGA TCTTTATCGA TGCTGGGTTT
GAATGGCGTC TGCCGGGTTG CTCCATGTGT CTGGCGATGA ACGATGACAG GCTGGAGGCC
GGGGATCGCT GCGCCTCGAC CAGTAACCGT AACTTCGAGG GTCGTCAGGG ACGCGGTAGC
CGCACTCACC TGGTGAGCCC TGCCATGGCC GCCGCCGCGG CGATTGCCGG TCATTTCGTC
GATATTCGCA AGCCATACTA G
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| Protein sequence | MAKTLYEKVW DSHIVAAPEG EAPLIYVDRH LVHEVTSPQA FSGLKVAGRK LRAPEKTFAT
MDHNTSTKSA SLDALSPMAR TQVETLAQNC KEFGVRLYDI HHKNQGIVHV MGPELGITLP
GTVIVCGDSH TATHGAFGAL AFGIGTSEVE HVMATQTLRQ LKAKTMKIEV RGLVADGITA
KDIVLAIIGK IGMDGGTGYV VEFCGEAIAA LSMEGRMTVC NMAIEMGAKA GMIAPDQTTI
DYLEGREFAP KGEAWQQAVA AWKALKSDED AMFDAHVVLE ASDIAPQLTW GTNPGQVVAI
DQCVPNPEDE TNPTVKASIE KALDYVALTP GTQMTDVSIN KVFIGSCTNS RIEDLRSAAQ
QAKGRKVAAG VTAIVVPGSG LVKEQAEAEG LDKIFIDAGF EWRLPGCSMC LAMNDDRLEA
GDRCASTSNR NFEGRQGRGS RTHLVSPAMA AAAAIAGHFV DIRKPY
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