Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3458 |
Symbol | murE |
ID | 4923383 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4141280 |
End bp | 4142746 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640165080 |
Product | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase |
Protein accession | YP_001095583 |
Protein GI | 127514386 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.040004 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACCTAT GCGATCTCCT AGCCCCCTGG TTTCATTATG CCGGTGGCGA GTCCCTCAGC CATCTGACGC TGGATAGTCG AGAGATAGGC CAGGGCAGCG TGTTTGTCGC CGTGCCTGGT CACAGGGTCG ATGGCAGAGA CTATGTCGAT ACCGCCCTGT CGCAAGGAGC CGTAGCGGCA CTTATTCATA CCGACGACCC GGCAGAGCAT GGCAAGGTGA GTCAGGACAA TGGCCTGCGT ATCTATTTCT TTCAGCTGCA GCGTCAGCTG TCGGCGCTCG CCTCTCAGCT CTATGTGTTG GGACGGGATA GGATCAAGCT GATCGGCGTG ACCGGCACCA ATGGTAAGAC ATCCGTAACC CAACTTATCG CTCAGCTAAG CGACGGTCTG GGCAAGCCGG CCGCCGTCAT GGGCACCCTA GGTAATGGCC TGTGGGGCCA GCTGGTCGAC AGCGGTAATA CCACGGCGGA TCCCATTACC GTGATGCGCC AGCTAGAAGA TTTTGACCGC CAGGGCACCG CCGTGTGCGC CATGGAGGTG TCCAGCCATG GCTTGGTGCA GGGGCGCGTA GACGCAGTGC CTTTCGATGT GGCCGTGTTT ACTAACTTGA GTCGGGATCA TCTGGATTAT CACGGTTCTA TGGATGCCTA TGGCGCGGCT AAGCAGCGCC TGTTTAGATT CAGTTCACTG AGCCACGGCT TGATCAACCT AGACGACCCT GTTGGGCGTC AGTGGATCCA GGATAAACGC TGCAAGGGCT TGGTGGGCTT TAGTATTCAA GGCCAGGAAG GCGCTGCTAT CTATACCAAA GAGGTCAAGC AGCATAGCCA AGGCGTTAGC GCGACCTTAG TCTGGCCCGA AGGCGAGGCG AAGATCGACT CGCCCCTGCT GGGTATCTTC AACCTGTCTA ACTTAGTCGC GGCCTTGGGC GCCCTCTATC TGAGCGGCTA CGCCATGGCG CAGCTGTTGA CTCAGGTGTC CAGCCTCAAA CCTGTGGCGG GACGCATGGA GCGTTTCACC ACGCAAGAAG GTGTCACCCT GGTGGTGGAT TACGCCCACA CGCCGGACGC CATAGAGCAG GCGCTGCGAG CCCTGCGTGG TCACTGCCGC GGCAAGCTGT GGTGTGTCTT TGGCTGTGGC GGCGACCGTG ACAAGGGCAA GCGGCCCTTG ATGGCCCGCG CCGCCGAGGA GAATGCCGAC TGCGTCATGG TGACCAGCGA CAATGCTCGC AGCGAAGATC CCATGGCGAT CATTCAAGAT GTATTGGCCG GACTCAACAA GCCGCAGATC GCCCTGACTC AGGTCGATAG ACAACAGGCG ATCCGCGAGG TGGTGACCCT GGCCTCCAAC GGCGACCTCA TTTTGCTGGC CGGTAAGGGT CATGAGACCT ATCAGGAGAT CGCCGGCAAA CGCCTGGATT ATGATGAACG CGCCCTGGCG GCGGCAATTG CGAGGGGCGG CAAATGA
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Protein sequence | MHLCDLLAPW FHYAGGESLS HLTLDSREIG QGSVFVAVPG HRVDGRDYVD TALSQGAVAA LIHTDDPAEH GKVSQDNGLR IYFFQLQRQL SALASQLYVL GRDRIKLIGV TGTNGKTSVT QLIAQLSDGL GKPAAVMGTL GNGLWGQLVD SGNTTADPIT VMRQLEDFDR QGTAVCAMEV SSHGLVQGRV DAVPFDVAVF TNLSRDHLDY HGSMDAYGAA KQRLFRFSSL SHGLINLDDP VGRQWIQDKR CKGLVGFSIQ GQEGAAIYTK EVKQHSQGVS ATLVWPEGEA KIDSPLLGIF NLSNLVAALG ALYLSGYAMA QLLTQVSSLK PVAGRMERFT TQEGVTLVVD YAHTPDAIEQ ALRALRGHCR GKLWCVFGCG GDRDKGKRPL MARAAEENAD CVMVTSDNAR SEDPMAIIQD VLAGLNKPQI ALTQVDRQQA IREVVTLASN GDLILLAGKG HETYQEIAGK RLDYDERALA AAIARGGK
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