| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3455 |
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| Symbol | murD |
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| ID | 4923380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4137493 |
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| End bp | 4138824 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640165077 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_001095580 |
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| Protein GI | 127514383 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00473721 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGAGTC AGTATACGCA CATAGTATTA GGATTGGGGG CCACAGGGCT CTCTGTGGTG
CGTTATCTCA TTAAGCAGGG GATCACGCCA CTGGTGATGG ACAGCCGCGA GAATCCGCCG
GGTCGCGAGA CCCTGAGCCA GGAGTTTCCC GAGGTGCTAC TGCTCACCGG CGGTTTTGAT
TGCCGCTACC TGGTACAGGC TAGCCAGATA GTCGTTAGCC CCGGGATCCC GCTGGATACC
GCTGAGGTTC GAGCCGCGGT GGATATGGGC ATAGATATCG TCGGCGATGT CGAGCTGTTT
GCCAGAGCGC TGGCAGATCG CCCCGCCTGC GTCATCGGCA TCACGGGTTC TAACGGTAAG
TCGACCGTGA CCACGCTGGT GGGTGAGATG GCCGCCAAGG CGGGCCTCAA GGTGGCCGTG
GGCGGCAATA TCGGCGTGCC CGTGCTGGAC CTGCTGGATG GTGACCATGA GCTGTTTGTG
CTCGAGCTAT CTAGCTTCCA GCTGGAGACG ACATCCAGCC TCAACTGCAT CAGTGCCACC
TGCCTGAATA TCAGCGAAGA TCACATGGAC AGGTATTCGG ATCTCGAGAG TTATCGTCAG
GCCAAGCTGC GTCTGTATGA CCAGACCAAG CTGGCGATCT TCAATCGCGA CGATCTGCTG
ACTCGCCCGA ATGAGCCGAT GAACCAGAAC AGCTTTGGCC TCTCTCTGCC CGAGGGGGAT
GAATGGGGCG TTAACCACGG CGTCCTGGTA CATGGTACGA CCGAATATGT TGCCGGCGCT
CAGGTTTCAC TGGTGGGCAG TCACAACCAG GCCAACTTGC TGGTCGCCAT GGCGCTGGCC
GATAGCGCCG GTGTCGATAA GGCGGCCATG GTCGAGGTGG CGAAACAGTT CAAGGGGCTG
GCCCATAGAT GCGAGCTCGT GGGTAAGCAT CAGGGCGTGA GCTATGTGAA CGATTCCAAG
GCGACCAATG TGGGCGCCAC CATAGCGGCC CTGCAGGGGC TGAGTGACCA TGAGGGTCAG
ATTATTTTAA TCGCCGGCGG TGACGGCAAG GGCGCCGATT TCTCGACGCT ACGGGGCGCA
CTGCTGGGCG TCGGTCAGGT GATCACCCTG GGTAAGGATG GAGACAGAAT CGCAGAGCAG
TTCGACGGTG CTATTCGCGT CGAGTCGATG CAAGAGGCGG TCGCTCAGGC GGCTCAGCTG
GCTAAGCCGG GCGATCTGGT CCTGCTGTCG CCTGCCTGTG CAAGCCTAGA TATGTACGCC
AACTTCATGG CCAGGGGCGA TGATTTTCGT GCCCAGGTGG AAGCCTTGGC CCAAGAGGTG
ATGCATGCGT AG
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| Protein sequence | MASQYTHIVL GLGATGLSVV RYLIKQGITP LVMDSRENPP GRETLSQEFP EVLLLTGGFD
CRYLVQASQI VVSPGIPLDT AEVRAAVDMG IDIVGDVELF ARALADRPAC VIGITGSNGK
STVTTLVGEM AAKAGLKVAV GGNIGVPVLD LLDGDHELFV LELSSFQLET TSSLNCISAT
CLNISEDHMD RYSDLESYRQ AKLRLYDQTK LAIFNRDDLL TRPNEPMNQN SFGLSLPEGD
EWGVNHGVLV HGTTEYVAGA QVSLVGSHNQ ANLLVAMALA DSAGVDKAAM VEVAKQFKGL
AHRCELVGKH QGVSYVNDSK ATNVGATIAA LQGLSDHEGQ IILIAGGDGK GADFSTLRGA
LLGVGQVITL GKDGDRIAEQ FDGAIRVESM QEAVAQAAQL AKPGDLVLLS PACASLDMYA
NFMARGDDFR AQVEALAQEV MHA
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