| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3438 |
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| Symbol | |
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| ID | 4923452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4105375 |
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| End bp | 4107084 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640165050 |
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| Product | type IV-A pilus assembly ATPase PilB |
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| Protein accession | YP_001095563 |
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| Protein GI | 127514366 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.141365 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.083139 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTCAA CCGGTCTACA TTTGGGATTA TCGACCCTTT TTATTCGCAA AGGACTACTT
AGCGAAGAGC AATTGTCAGA AGCCGTAGAT CTATCCCGTA AAAACAAGCA ACCTCTAGTC
AGTACTTTAA TTGCTACCAA AGTGCTTTCA GCTAGGGAAG TGGCAGAGCT ATGCTATGAA
GAGTATGGTA CGCCTTTGTT GGACTTAAAT GAATTTGATA TCAGCAGCAT TCCGGAAGCA
TTCCTAAATA AAAAGCTAAT TGAAAAACAC AAGTGTCTTC CATTATTCAA GCGTGGAAAC
CGTCTATATA TAGGGACTTC CGATCCTACC AATATTGCAG CATTAGAAGA CTTTCAATTT
AGTGCAGGGT TACATGCGGA GGCGATTCTC GTTGAAGATG ACAAACTAAC AGTCGCTCTT
GAGAAGGTTT TAGAAGAAGA TATCTCTGCG CTCGATTTAG ATGGCATAGA TGAAGATTCA
CTATCCGGCA TTGAAATTAC AGATACCGAC AAGCGCCAGG AAGAACAACA GGGCGACGCA
AGTGACGATG CTCCTATCGT CATATATATA AACAAGATAC TCACCGACGC CATACGTAAA
GGCGCGTCAG ACTTACACTT CGAACCTTAT GAAAAACGCT ATCGTATTCG ATTTCGCATC
GATGGTATTT TACATGAAGT ATCAGAACCT CCTGTTAACT TATCAGGACG AATTTCAGCG
CGTCTAAAAG TAATGTCAAA ACTCGATATC GCCGAACGTC GAGTTCCTCA AGATGGCCGA
ATTAAGATGA AGCTGTCTCG CACTAAATCT ATCGATTTTC GTGTCAGCAC CTTGCCGACA
ATTTGGGGCG AAAAGATCGT AATGCGTATC TTAGACTCCT CTTCTGCCCA ACTCGGAATT
GAAAAGCTCG GCTACGAAAA TGATCAACGC AAACTCTATG AAGAAATGTT GGCAAAACCT
CAAGGCATGA TCTTGGTAAC CGGCCCTACA GGCTCAGGTA AAACAGTATC CCTTTATACA
GGCCTTAATA TTCTCAATAC CGAAGAGCGC AACATTTCAA CCGCTGAAGA CCCAGTCGAA
ATTAACTTAG AAGGCGTCAA TCAGGTTCAT ATTAACTTGA AGGCTGGACT CACCTTCGCC
TCGGCGCTGC GCTCTTTCTT ACGTCAAGAT CCCGATGTGG TCATGGTGGG TGAGATACGT
GACTTGGAAA CCGCCGAAAT TGCCATTAAA GCAGCACAAA CCGGTCACTT GGTACTTTCG
ACCCTTCATA CCAACTCGGC TGCCGAAACG CTAACTCGTC TGATAAATAT GGGCGTCCCA
GGTTACAACA TTGCCAGCTC AGTTAACCTA ATTATCGCCC AACGTCTCGC CAGAAGGCTT
TGTACCGAAT GCCGTCAACC GGAAGAAGTC CCCGAACACG AACTACTGAA ACTCGGTTTT
ACACAAGCAC AAATTGATGA AGGCTTTACC GTCTATAAGC CAGTTGGCTG TGACCTTTGC
TCTGGCGGTT ATAAGGGGCG TGTCGGTATT TATGAGGTGA TGAAGATGTC AGATGAGATT
GCCCGTACTA TTATGGAAGG AGGAAATTCT TTGCAAATTG CCACCCAGGC TAAAGAGCAA
GGAATGCGAG ATCTCAGAGA ATCTGGACTA CGAAAGGTTA TTGCCGGCGT AACAAGTATT
GCCGAAATAA ATCGTGTAAC TAGCTTCTAA
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| Protein sequence | MPSTGLHLGL STLFIRKGLL SEEQLSEAVD LSRKNKQPLV STLIATKVLS AREVAELCYE
EYGTPLLDLN EFDISSIPEA FLNKKLIEKH KCLPLFKRGN RLYIGTSDPT NIAALEDFQF
SAGLHAEAIL VEDDKLTVAL EKVLEEDISA LDLDGIDEDS LSGIEITDTD KRQEEQQGDA
SDDAPIVIYI NKILTDAIRK GASDLHFEPY EKRYRIRFRI DGILHEVSEP PVNLSGRISA
RLKVMSKLDI AERRVPQDGR IKMKLSRTKS IDFRVSTLPT IWGEKIVMRI LDSSSAQLGI
EKLGYENDQR KLYEEMLAKP QGMILVTGPT GSGKTVSLYT GLNILNTEER NISTAEDPVE
INLEGVNQVH INLKAGLTFA SALRSFLRQD PDVVMVGEIR DLETAEIAIK AAQTGHLVLS
TLHTNSAAET LTRLINMGVP GYNIASSVNL IIAQRLARRL CTECRQPEEV PEHELLKLGF
TQAQIDEGFT VYKPVGCDLC SGGYKGRVGI YEVMKMSDEI ARTIMEGGNS LQIATQAKEQ
GMRDLRESGL RKVIAGVTSI AEINRVTSF
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