Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3416 |
Symbol | |
ID | 4923570 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4070305 |
End bp | 4072878 |
Gene Length | 2574 bp |
Protein Length | 857 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640165028 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001095541 |
Protein GI | 127514344 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.575595 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCATTA GCAAGAAAAT TGTGGTTTTT GTGGCCGGCT TCTGCCTGCC CGCCATCATG GCCATCTCCT ATGGGTTAAA CGCCTGGTAT GAACTGCGCC TGAGCGATCT TCGCCAGGAG ATGAGTCAGC GTGCTCAGCA GAATATCGCC CACCATCTCG AGGAAGATCT GGGGCAGTTT GAGATGTTGG CCCAGCTCTA CGGCGTGCCC ATGGCGCTCT TGCCTGCCGA CCAGCGCCAG ACCCTGTCGG CGACCTGGCA TGCCATGGCC CTGTCTGCCC ATGTCAGCCT CTACGGCGTA GAGGACGATG GCATTCGCGC TTTTGCAGAG CCCAGCCCGG AAACCCTGGC TTTGGATCTC GATGCGCTCT GGCCCGAACT CCTGAACCTG GATGGCGTTC GCACCGGTTT TCTGCTCCAG GGCAAGCAGG GCTTTCTTGC CTGCGTGATC CCTCTGTCTG ACAACAGGCG TCTGCTGATG GTGCGCCGGG TCGACAATCA ATTATTCGAA CACTATCAGG CTTATTCGTC GCTGGCGGGA CTGAGGCTCG CGACCACCAC GCCGAGCCTG CTGGCGCAGA CATCGCCACA GCGGGTGACT CTGGAGGTGC CAAGCCTGCT CGGTGACCAT TCGCTGCTTT TAGATATCGA GCTGACACAG AGAGACAGCC TGGTGCAGAG CGGTCCGGCG ACCCTGGTCT ATCTCATCGG TGGCATCAGC CTGTTGCTGT TGTTGCTGGG CTACCTCTGG CTGCGCCATG GGGTGGTCGA TCCCCTCAAG CAGTTATTGC GTCAGCTCTC GCGGGTGGAT CCGACGGCGA AGACCTATCA ACCGATCCGG GCCAAGGGCA CCTCAGAATT TATGGTGATC TCCGAGCAGG TCAACAGCCT GCTGGCGCGA ATCTTCCAGC AGAAGGAGCG CTCCAAGATC ACCCTGGAGG CGATAGCCGA GGCGGTGATC CTCACCGACA GCTGGGCCAA GGTGATCTAT CTCAATCCTC AGGCGGAGCG GCTGCTCAAG GTGAAGGCCG AATCTGCTGT GGGGATGAAC CTGGATAAGG TGTTTCGCAG CGAGCCCGAG CTGAATCAGT CGCTATTTGC CTTCATGGCG AGCGGCACGC CGACGCCCAT GCTGAGCAAG GTCAAGTTTA CCAGCCATAC GCCCAGGCTG ATGGAGCGTA GCATCAGTAA CCTCAAGGGG CCGAACAACA AGATCATCGG CACAGTGATC GTGCTGCGGG ACATTACCCA AGAGGAGCTG CTCAAGCATC AGCTCAGACG CAGGGCAAAC TTCGATAATG TTACCGGCCT ACTCAATCGC TGCGCCTTCG AGGAGCGATT ACAGGCCTTT GCCGAAGACG CCCAGACTCT GGCTATCTGC TATTTCGACC TGGAGCAGTT TAAGCTGATC AACGACTCTT GCGGCCACAA CGCCGGCGAT GCCATGTTGA AGATGGTGGC CAAGGCGATT CAGGCCAGCC TGGAGGGGCA GGGCTTGCTG GCCCGCCTGG GCGGCGACGA GTTTGGCCTG GCGCTGAAAG ACTTAGGTGT GGTGCCACTG GCTCAGCAGG TGAAACAGAT CATCAATGCC GTCGGCAAAC AGGTAATGGA GCATCACGGC TGCCATTATC ATGTGGGGAT CAGCGCCGGG GTGGCATTGG CCAGGGCACC TTATATCAAT GCGCTGGAGC TACTCAAAGA TGCCGATATC GCCTGTATCG CCGCCAAGCG CAAGGGCAGC AATCAGGTGC ATTTTTATGA TGATAAGGAC AAGGAACTCA CCTATCAGCG CAATGCCCCC AAATGGGCGG TGCGTATCGC CCAGGCGATC GAACACAACG AGCTGCTGCT CTACTATCAG CCCATCAAGG CGTTGGGGCC TCAGGGCAAG CAGCGCATGG AGGTTTTGTT GAGGATCCAG GAACCCTGTG GGCGTATCCT GGCGCCGGCG CAGTTTATCG CCGCGGCCGA ACGCTTCAAG CTGATGACAG ATGTGGATAA AGAGGTGATA CGTAAGACCT TCCTCTGGCT CTCTCTGCAT GAGGAGCTGT GGGCGGATCA CTGCCTGTCG ATCAACCTCT CGGCCAACAG CCTGGGGGCC GAGGGCATGG TGGACTATAT CATCGCTCAG TTGGAGCGTT TCGCCATCCC AAGTCAGTGC ATCTGTTTCG AGATCACCGA GACCAGTGCG ATTCAGAATC GTAACCGGGC GATGGAGATG CTCAATCAGC TGAAGAAGCA GGGCTTCTCC TTCGCCCTGG ACGACTTCGG TACCGGGTTT GCTTCTTATG GTTACCTGCG GGAGCTGCCG GTGAACTATG TGAAGATCGA TGGCTGCTTC ATCAAGTCCC TGGCCAGCAA TGCCAAGGAC TACGCCATCG TCAAATCGAT ACACGACGTC TGCCGCGTGA TGGGCATAGA GACGGTGGCT GAGTTCGTGG AGAACCAGGA GATCATCGAG CGCCTCAAGT CGATCGGCAT CAACTATGCC CAGGGCTATG CCATCGGTCG TCCCAAGAGC CTGGATCAAT ACCTCACCGC GCCGACCGAC AATGTGCATC GGCTGATGGC CTAA
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Protein sequence | MRISKKIVVF VAGFCLPAIM AISYGLNAWY ELRLSDLRQE MSQRAQQNIA HHLEEDLGQF EMLAQLYGVP MALLPADQRQ TLSATWHAMA LSAHVSLYGV EDDGIRAFAE PSPETLALDL DALWPELLNL DGVRTGFLLQ GKQGFLACVI PLSDNRRLLM VRRVDNQLFE HYQAYSSLAG LRLATTTPSL LAQTSPQRVT LEVPSLLGDH SLLLDIELTQ RDSLVQSGPA TLVYLIGGIS LLLLLLGYLW LRHGVVDPLK QLLRQLSRVD PTAKTYQPIR AKGTSEFMVI SEQVNSLLAR IFQQKERSKI TLEAIAEAVI LTDSWAKVIY LNPQAERLLK VKAESAVGMN LDKVFRSEPE LNQSLFAFMA SGTPTPMLSK VKFTSHTPRL MERSISNLKG PNNKIIGTVI VLRDITQEEL LKHQLRRRAN FDNVTGLLNR CAFEERLQAF AEDAQTLAIC YFDLEQFKLI NDSCGHNAGD AMLKMVAKAI QASLEGQGLL ARLGGDEFGL ALKDLGVVPL AQQVKQIINA VGKQVMEHHG CHYHVGISAG VALARAPYIN ALELLKDADI ACIAAKRKGS NQVHFYDDKD KELTYQRNAP KWAVRIAQAI EHNELLLYYQ PIKALGPQGK QRMEVLLRIQ EPCGRILAPA QFIAAAERFK LMTDVDKEVI RKTFLWLSLH EELWADHCLS INLSANSLGA EGMVDYIIAQ LERFAIPSQC ICFEITETSA IQNRNRAMEM LNQLKKQGFS FALDDFGTGF ASYGYLRELP VNYVKIDGCF IKSLASNAKD YAIVKSIHDV CRVMGIETVA EFVENQEIIE RLKSIGINYA QGYAIGRPKS LDQYLTAPTD NVHRLMA
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