| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3385 |
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| Symbol | uvrD |
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| ID | 4923925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4033576 |
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| End bp | 4035756 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164997 |
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| Product | DNA-dependent helicase II |
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| Protein accession | YP_001095510 |
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| Protein GI | 127514313 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01075] DNA helicase II |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGTAT CTTCTTTACT CGACGGCTTA AACGACAAAC AGCGCGAGGC CGTCGGCGCA
CCACAATCTA GCATGCTGGT GCTGGCAGGC GCGGGCAGTG GTAAGACCCG GGTACTGACC
CACCGCATCG CCTGGCTGAT GCAAGTAGAG CAGCAGAGTC CCTATTCTAT TCTGGCGGTG
ACCTTTACCA ACAAGGCCGC GGCCGAGATG CGCGAGCGTG TGGAGAAGGT GAGCGGCAGC
AACATGGGCC GCATGTGGAT AGGTACCTTC CATGGCCTGG CCCACCGCCT GCTGCGCACC
CATTATCAAG ACGCCAACTT GCCCCAGAGT TTCCAGATCC TCGACTCGGA CGACCAGCTC
AGGCTGATCA AGCGGATCCT CAAGAGCCTC AACCTGGACG AGAAGCAGTA TCCGCCCCGT
CAGGCCCAGG GCTACATTAA CGGCAAGAAA GATCAGGGGC TGAGACCCAA GCATATCGAT
GCAGGTGGCT TCCCCATTGA GCAGAATCTG CTGAAGATCT ATCAGGTGTA TCAGGAGTCA
TGCGATCGCG CCGGCCTGGT GGACTTTGCC GAGATCTTGC TAAGGGCCCA TGAGCTCTGG
CTCAACAAGC CCCATATTCT GGAGCACTAT CAGGAGCGCT TTAAGAACAT CCTGGTGGAC
GAGTTTCAGG ATACCAACGC CATCCAGTAT GCCTGGATCC GCGTGTTGGC CGGCAGCACG
GCCAACGTGA TGATCGTCGG CGACGACGAC CAGTCTATCT ATGGTTGGCG CGGCGCCCAG
GTGGAGAACC TGCACCGCTT CCTGCAGGAC TTCCCCGCGG CCCAGACCAT ACGTCTGGAA
CAGAACTATC GCTCCAGCGG CAACATACTT AACGCCTCCA ACGAGCTGAT CGCCAATAAC
CCGGACCGAC TGGGTAAGAA GCTGTGGACC GAAGACAAAG ACGGCGAGAA GATCGGCCTC
TATTGCGCCT TCAACGAGAT GGATGAGGCC CGCTTCATCG TGGGTCGCAT CACGGACTGG
CAGGATATGG GCGGTAACCT CAGCGATTGC GCCATCCTCT ATCGCTCCAA CGCCCAGTCG
CGGGTACTGG AAGAGGCGCT GCTGCACAAG GGGATGGCCT ACCGCATCTA TGGCGGCCTG
CGCTTCTTCG AGCGTCAGGA GATCAAGGAT GCCATGGGGT ATCTGCGGCT GATCAGCAAC
AAGAACGACG ATGCCGCCTT CGAGCGTATC ATCAACACGC CGACCCGAGG CATAGGCGAT
CGTACCCTGG ATATCCTGCG CAGTACGGCG CGCCAGCAGG AGCTGACCCT GTGGCAGACC
TGCCTGCGCC TGCTCGATGA GAAGGTGCTC TCTGGCCGCG CCGCCAACGC GGTACGTAGC
TTCATGGATC TAATCGTTAC TCTGCAGCAG GAGACGGCGG AGCAGTCGCT GCACCGCATG
ACAGATCATG TTATCCAGGC CTCTGGCCTC AAGGCCATGT ATGAGGCGGA GAAGGGCGAG
AAGGCCCGCG CCAGGGTGGA AAACTTAGAG GAGCTGGTCA CCGCGGCGCG CACCTTCGTG
ATGCCGGAAG ATCTCGAGGA CATGGGTGAG CTAAATGCCT TCCTCTCCCA CGCGGCGCTC
GAGGCGGGCG AGGGCCAGGC CGATGCCTTC ACCGACGCCG TGCAGCTGAT GACCTTGCAC
TCGGCCAAGG GCCTGGAGTT CCCCATGGTC TTCATGGCAG GGGTCGAGGA GGGGATCTTC
CCCAGCCAGA TGGCGATGGA TGAGGGCGAC AGGTTGGATG AGGAGCGCCG TCTCTGCTAC
GTGGGTATGA CCCGCGCCAT GAAGCAGCTC TATATCACCT ATGCCGAGTC GCGCCGTATC
TATGGCCGGG AAAACTATGC CCGTCCGTCA CGTTTCATCA AGGAGATCCC TGGCGACTAT
GTGCAGGAGA TCCGCATGCG AACCAGCGTG TCGGCGCCGG CGAGCAGCAA CAGATTCGGT
CAGGCCCAGC CCGCCTTTAA CGGTTCAGCC TTCAACGATT CCGGCTTCAA CATCGGCCAG
CGGGTGAATC ATCCCAAGTT TGGTGAAGGC AAGGTGACCA ACTTCGAGGG TAGCGGCGCC
CAGGCCAGAG TCCAGGTGGA TTTTCTCGAC GTGGGCAGCA AGTGGCTGGT GGTGGCATAT
GCCCGTCTCG AGACACTGTA A
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| Protein sequence | MDVSSLLDGL NDKQREAVGA PQSSMLVLAG AGSGKTRVLT HRIAWLMQVE QQSPYSILAV
TFTNKAAAEM RERVEKVSGS NMGRMWIGTF HGLAHRLLRT HYQDANLPQS FQILDSDDQL
RLIKRILKSL NLDEKQYPPR QAQGYINGKK DQGLRPKHID AGGFPIEQNL LKIYQVYQES
CDRAGLVDFA EILLRAHELW LNKPHILEHY QERFKNILVD EFQDTNAIQY AWIRVLAGST
ANVMIVGDDD QSIYGWRGAQ VENLHRFLQD FPAAQTIRLE QNYRSSGNIL NASNELIANN
PDRLGKKLWT EDKDGEKIGL YCAFNEMDEA RFIVGRITDW QDMGGNLSDC AILYRSNAQS
RVLEEALLHK GMAYRIYGGL RFFERQEIKD AMGYLRLISN KNDDAAFERI INTPTRGIGD
RTLDILRSTA RQQELTLWQT CLRLLDEKVL SGRAANAVRS FMDLIVTLQQ ETAEQSLHRM
TDHVIQASGL KAMYEAEKGE KARARVENLE ELVTAARTFV MPEDLEDMGE LNAFLSHAAL
EAGEGQADAF TDAVQLMTLH SAKGLEFPMV FMAGVEEGIF PSQMAMDEGD RLDEERRLCY
VGMTRAMKQL YITYAESRRI YGRENYARPS RFIKEIPGDY VQEIRMRTSV SAPASSNRFG
QAQPAFNGSA FNDSGFNIGQ RVNHPKFGEG KVTNFEGSGA QARVQVDFLD VGSKWLVVAY
ARLETL
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