| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3378 |
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| Symbol | |
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| ID | 4923918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4026554 |
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| End bp | 4027309 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640164990 |
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| Product | Sec-independent protein translocase, TatC subunit |
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| Protein accession | YP_001095503 |
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| Protein GI | 127514306 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
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| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.865812 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGCAAC AGCAGCCGTT AATCAGCCAC TTGCTCGAGT TACGCAACAA GTTGCTCAAA
GCCATTGGCA GTGTCCTCCT GGTCTTTATC TGCTTAGTCT ACTGGGCAAA CGATATCTAT
CACTACATGG CCACGCCGCT TATGCAGGCG CTACCCGAGT CCAGTAGTAT GATTGCGACC
GATGTGGCCG CGCCCTTCTT TGCTCCCTTT AAACTGACGC TGATCCTAGC GTTTTTTATC
GCCATTCCCT ATGTCTTGTA CCAGATCTGG TCCTTTATCG CGCCAGGCCT CTACAAGCAT
GAGAAGCGTC TGATGGTGCC GCTACTGGCC AGCAGCACCA TACTCTTCTA CCTGGGTATC
GCCTTCACCT ACTACATAGT ATTTCCCGTG GTGTTTGGCT TCTTCACCAG CGTGGCCCCC
GAAGGGGTGC AGGTGGCGAC CGATATCAGC AGCTACCTGA GCTTTGTGCT TAAGCTGTTC
TTCGCCTTCG GTCTGGCGTT CGAGATCCCG ATCGCTGTGA TCTTGCTCTG TTGGGCGGGG
GTTACTACGG TTGAAGATCT CAGGGCGAAA CGTCCTTATA TTATTGTCGG CGCCTTCGTG
GTCGGCATGC TGTTAACGCC GCCAGATATC ATCTCACAAA CCATGTTGGC CGTGCCTATG
CTGATATTGT TTGAGGGGGG ATTGATTGCC GCGCGTTTCT ACAGTAAAAA GGACTCTGAC
GAAGACGAGC TCTCCGAGCA AGACAACGCT GAGTAA
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| Protein sequence | MSQQQPLISH LLELRNKLLK AIGSVLLVFI CLVYWANDIY HYMATPLMQA LPESSSMIAT
DVAAPFFAPF KLTLILAFFI AIPYVLYQIW SFIAPGLYKH EKRLMVPLLA SSTILFYLGI
AFTYYIVFPV VFGFFTSVAP EGVQVATDIS SYLSFVLKLF FAFGLAFEIP IAVILLCWAG
VTTVEDLRAK RPYIIVGAFV VGMLLTPPDI ISQTMLAVPM LILFEGGLIA ARFYSKKDSD
EDELSEQDNA E
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