| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3358 |
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| Symbol | |
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| ID | 4922199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4007656 |
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| End bp | 4008936 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640164970 |
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| Product | outer membrane efflux family protein, putative |
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| Protein accession | YP_001095483 |
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| Protein GI | 127514286 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00565244 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGAAAAA GCTTAATCGC CACCGCATTA CTGGGCGCGA TATGGGGCGC GCCCCTATTC
GCCGAAACCC TTTACTCAGA AGCGGGGGAA ATGGCGCCGG CACCCTTGCT GGCACAGATA
GAGCAGAGTG GTTTTCAGGG CTGGCTCGCT CCCTTGATGA GCAAGGTGAA TCAACTGCCT
GAGATCCAGG CGCAGCAAGC CAAGGTGCGT CAGGCCCAGT TGTTGGTGGA AGCCGCCGAC
AGGCCCGTCT ATAACCCTGA GCTGGGGGTG AGTTACCAAA ATGCCAGCGA AGATACCTAT
ACCCTGGAGG TGAGTCAGAC CCTGGACTGG GGCGACAAAC GCGGGATAGC GACACGTGTC
GCCCAGCTCG AGGCCGAGAT CCTGCTGGCC GACAATCGTC TGGCCCGCAG CCAGCTCTAT
GGCGAACTCC TGATGGCGCT GGTGGAGCAG GCGCAGCAGG CGAAATTACT CGCCTTTCAG
GGACGTTTGC TAGAGAGCGC CAAGCAGCAG GTCGCCATCG CCAAGCAACA GCTGGAGGCG
GGGGCCCTGT CACAAGCCGA GCTGCAGTTG ATGCAGCTGG ATCTGGCCAG TAAGGCCGCA
GATCACGCCA GTGCCGAGCA GGCCTCGCTG GCCGCCGATG CCAGCGTGCT CAGCCGCTTT
GGTGAGCTGG AGTTGCCCTT CGCCGAGTTT ATCGGTGCCC TCAGCGTCGA CACCAGTCAG
GAGGTCGGCC CGGATCTGCC CGCGCTGGCG GGTGCCTACC AGCAGGTGAT GATGGCCAAG
CTGGCCAGCC AACAGGTGGC GGCAGACACC AACGCCGATC CCAGTATCAG CCTGAGCGCC
GAGCGTGAAG GCGAGGAGAA CAAGCTGGGA GTGGGGCTGT CGATCCCGAT TCAGATCCGC
AACGATTATC GCGAGGCCAA GGCCGCGGCC GGTACTCAGG TCGCCATCGC CGAGCAAGAC
TATCTGGCCC GTGAGCGTCG CCTCACCCAG GCCGCCAAAC TTTTTCACCT AAGCCTGCCC
AGGCTGCAGC AGCGTTACCG CGAGTGGCGT GAGTTGGTGC TCACCTCTGG CGCCGGTGTG
CAGGATGCCC TGTCACAGCA GTGGCGTGCG GGCGACATCA GCACCAGCGA CTACCTGCAG
GGACAGAGGC AGCTGGCTAA CAGCTATCTG GCAGGTCTAT CCCTCGAGGG CGCCCTCTAT
CGCAGCTGGC TCGACTGGAT GGGGCAGAGC GGTCAACTCG AGAACTATCT GCAGCGTCAG
CTCGGCCGCG AAGGCGTTTA G
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| Protein sequence | MRKSLIATAL LGAIWGAPLF AETLYSEAGE MAPAPLLAQI EQSGFQGWLA PLMSKVNQLP
EIQAQQAKVR QAQLLVEAAD RPVYNPELGV SYQNASEDTY TLEVSQTLDW GDKRGIATRV
AQLEAEILLA DNRLARSQLY GELLMALVEQ AQQAKLLAFQ GRLLESAKQQ VAIAKQQLEA
GALSQAELQL MQLDLASKAA DHASAEQASL AADASVLSRF GELELPFAEF IGALSVDTSQ
EVGPDLPALA GAYQQVMMAK LASQQVAADT NADPSISLSA EREGEENKLG VGLSIPIQIR
NDYREAKAAA GTQVAIAEQD YLARERRLTQ AAKLFHLSLP RLQQRYREWR ELVLTSGAGV
QDALSQQWRA GDISTSDYLQ GQRQLANSYL AGLSLEGALY RSWLDWMGQS GQLENYLQRQ
LGREGV
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