Gene Shew_3356 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3356 
Symbol 
ID4922197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4003102 
End bp4006332 
Gene Length3231 bp 
Protein Length1076 aa 
Translation table11 
GC content62% 
IMG OID640164968 
ProductCzcA family heavy metal efflux protein 
Protein accessionYP_001095481 
Protein GI127514284 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3696] Putative silver efflux pump 
TIGRFAM ID[TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0717317 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000585076 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCTTCAGA AACTTATCGA TAGCGCGATA CGCAATCGGC TTCTGGTGGC CCTGGCGCTG 
CTGTGTGGTG TGGTAGCCAG TGTCGCCATG TTACCTAAGC TCAATCTCGA TGCCTTTCCC
GATGTCACCA ATGTGCAGGT GACGGTCAAT ACCGCCGCCG AGGGGCTAGC GGCCGAGGAG
GTGGAAAAGC TGATCAGCTA CCCGGTGGAG TCGGCCATGT ACGCCCTGCC ATCGGTGACC
GAGGTGCGCT CCTTGTCACG CACCGGCCTC TCCATAGTGA CTGTGGTGTT TGCCGAAGGC
ACAGATATCT ACTTTGCCCG TCAGCAGGTA TTCGAGCAGC TGCAGGCCGC CAGGGAGATG
ATCCCTGACG GGGTGGGGGT GCCCGAGATA GGCCCCAACA CCTCAGGCCT GGGACAGATC
TATCAGTACA TATTGCGGGC CACGCCTGAG TCCGGTATAG ATGCCGCCGA GCTAAGGAGC
CTCAACGACT ATCTGGTGAA GCTCATCATG ATGCCGGTGG GGGGCGTGAC CGACGTGCTC
TCTTTCGGCG GCGAGGTGCG TCAATATCAG GTGCAGATAG AGCCTAACAA GCTGCGCAGC
TATGGCCTCT CCATGGCCCA GGTGACTCAG GCGCTGGAGA GCAACAACCG CAACGCAGGT
GGCTGGTTTA TGGACCAGGG ACAGGAGCAG CTGGTGGTAC GTGGCTACGG CCTGTTACCG
GCGGGTGAGG CTGGCCTGGC GGCGATCGCC CAGATCCCAC TCACAGAGGC AGGCGGTACG
CCGGTGCGGG TGGCCGACAT TGCCAAGGTG GACTTTGGCG CCGAGATCCG TGTGGGCGCG
GTCACCATGA CCCGCCGCGA CGATGCTGGA ACGCCAAAGG CGCTAGGCGA AGTGGTCGCC
GGCGTGGTGC TCAAGCGTAT GGGGGCCAAC ACCAAGGCGA CCATCGACGA TATCTCGGCC
CGCACCGCCA TGATAGAGCA GGCCCTGCCC AAGGGCGTCT CCTTCGAGGT GTTCTACGAT
CAGGCGGATC TGGTGAACAA GGCGGTAGAG ACGGTGCGCG ATGCCCTCTT GATGGCCTTC
CTGTTTATCG TGGTTATCCT GGCGCTCTTC CTGGTGAACC TGCGCGCGAC TTTGTTGGTG
CTGCTCTCTA TCCCAGTCTC CATCGGCCTG GCCTTGATGG TGATGGCTTA CTTTGGCATG
TCGGCCAACC TGATGTCCCT GGGTGGGCTG GCGGTGGCTA TCGGCATGCT GGTGGATGGC
TCAGTGGTGA TGGTGGAGAA CATCTTCAAA CATCTGACCC AGCCGGACAG ACGCCATTTC
GATCAGGCCA AGGCCCGCGC CTCGGGTGAG TCTGACCCCT ACCACGGCGA GGAAGATGGC
CTGGGAGAAG GAGAGCGCAG CGGCATCGCC CTGAGGGTGA TGCTGGCGGC CAAGGAGGTG
TGCAGCCCGA TCTTCTTCGC CACCGCCATC ATCATAGTGG TGTTTGCGCC GCTGTTTGCC
CTGGAAGGGG TAGAGGGCAA GCTGTTCCAG CCCATGGCGG TGAGCATCAT TCTGGCCATG
GTGGCGGCGC TGTTTGTGGC CCTGATCGGC GTGCCAGCTT TAGCTGTCTA TCTGTTCAAG
CGCGGCGTGA CCCTGAGGGA GAGTCCGGTA CTCAAGCCGG TTGAGGCCCT GTATCGTCAC
CTGCTTAGTG CCACCATGGG CAGGCCCAAG TTGGTGCTGC TGACGGCGGT GACCCTGTTC
GGCATCAGCA TGGCGCTGCT GCCAAGGCTA GGTACCGAGT TTGTGCCCGA GCTCGAGGAG
GGCACCATTA ACCTGAGGGT GACCCTGGCG CCAACCGCCA GCCTGAGCAC CTCATTGGAT
GTGGCGCCCA AGCTCGAGGC CATGTTGATG ACTTTCCCCG AGGTCGACTA TGCCCTGAGC
CGTATTGGTG CCCCGGAACT TGGCGGCGAT CCTGAGCCTG TGAGCAACAT AGAGATCTAT
ATCGGCCTTA AGCCGATCGA GGAGTGGGAA CACGCCGAGA CCCGTCTCGA GCTGCAGCGC
AAGATGGAAG AGAAGCTTAG CGTCTTCCCC GGCCTGCTAT TTACCTTCTC CCAGCCCATC
GCCACCCGTG TCGATGAGTT GCTTTCAGGG GTGAAGGCCC AGCTGGCGAT CAAGCTGTTT
GGCCCGGATC TCGAGGTGCT CTCCAGCAAG GGGCAGGAGC TCAGCGAGCT GGTGTCGGGT
ATCGAGGGGG CGGTCGATGT CTCCCTGGAG CAGGTGTCCG GCGAGGCCCA GCTGGTGGTG
CGTCCCAAGC GCGATCTGCT GGCCCGCTAT GGCATCAGCG TCGATGAGGT GATGAGCCTG
GTGAGTCAGG GCATAGGCGG TGTCAGCGCC GGGCAGGTGA TCGACGGCAA CGCTAGATAC
GACATCAATG TGCGTCTGGC CAGCCAATAT CGCAGCGCGC CCGATGCGCT GGAGGATCTG
CTGCTCAGCG GCGTAAACGG TGCGACCGTG CGTCTAGGCG AGGTGGCCGA TGTGGTGGTC
GAGATGGCGC CGCCTAATAT CCGCCGTGAC GATGTGCAAC GCCGGGTGGT GGTGCAGGCC
AACGTGTCGG GGCGCGACAT GGGCTCAGTG GTGAAGGATA TCTACGCCAT AGTGCCTCAG
GCGGATCTGC CGCCGGGTTA TACGGTCGTG GTCGGCGGTC AGTATGAGAA CCAGCAGCGG
GCTCAGCAGA AGCTGATGTT GGTGGTGCCC ATCTCCATCG CCCTGATCGC CCTGCTGCTC
TACTTCTCTT TTGGCTCCAT TAAGCAGGTG GGCCTGATCA TGGCCAACGT GCCGCTGGCG
CTGATCGGCG GCGTGGTGGC CCTCTATGTC AGCGGCACCT ATCTGTCTGT GCCTAGCTCC
ATCGGCTTTA TCACCCTGTT CGGGGTGGCA GTGCTCAATG GTGTGGTGTT GGTGGACTCG
ATCAACCAGA GGCGCGCCTC GGGAGAAGCC CTCTACACCA GCGTGTATGA AGGCACTGTG
GGACGCCTGC GCCCCGTGCT GATGACGGCG TTGACCTCGG CGCTGGGTTT GATCCCAATA
CTCCTGTCTA GCGGTGTGGG CAGCGAGATC CAAAAGCCGC TGGCGGTGGT GATCATAGGC
GGCCTGTTTA GCTCTACCGC CCTGACGCTG CTGGTGTTGC CGACCCTGTA TCGCTGGCTC
TATGAGACCA AGGCGCTTAA AGGGGACAAG GAGTTGGAAG CCCTAGACTA G
 
Protein sequence
MLQKLIDSAI RNRLLVALAL LCGVVASVAM LPKLNLDAFP DVTNVQVTVN TAAEGLAAEE 
VEKLISYPVE SAMYALPSVT EVRSLSRTGL SIVTVVFAEG TDIYFARQQV FEQLQAAREM
IPDGVGVPEI GPNTSGLGQI YQYILRATPE SGIDAAELRS LNDYLVKLIM MPVGGVTDVL
SFGGEVRQYQ VQIEPNKLRS YGLSMAQVTQ ALESNNRNAG GWFMDQGQEQ LVVRGYGLLP
AGEAGLAAIA QIPLTEAGGT PVRVADIAKV DFGAEIRVGA VTMTRRDDAG TPKALGEVVA
GVVLKRMGAN TKATIDDISA RTAMIEQALP KGVSFEVFYD QADLVNKAVE TVRDALLMAF
LFIVVILALF LVNLRATLLV LLSIPVSIGL ALMVMAYFGM SANLMSLGGL AVAIGMLVDG
SVVMVENIFK HLTQPDRRHF DQAKARASGE SDPYHGEEDG LGEGERSGIA LRVMLAAKEV
CSPIFFATAI IIVVFAPLFA LEGVEGKLFQ PMAVSIILAM VAALFVALIG VPALAVYLFK
RGVTLRESPV LKPVEALYRH LLSATMGRPK LVLLTAVTLF GISMALLPRL GTEFVPELEE
GTINLRVTLA PTASLSTSLD VAPKLEAMLM TFPEVDYALS RIGAPELGGD PEPVSNIEIY
IGLKPIEEWE HAETRLELQR KMEEKLSVFP GLLFTFSQPI ATRVDELLSG VKAQLAIKLF
GPDLEVLSSK GQELSELVSG IEGAVDVSLE QVSGEAQLVV RPKRDLLARY GISVDEVMSL
VSQGIGGVSA GQVIDGNARY DINVRLASQY RSAPDALEDL LLSGVNGATV RLGEVADVVV
EMAPPNIRRD DVQRRVVVQA NVSGRDMGSV VKDIYAIVPQ ADLPPGYTVV VGGQYENQQR
AQQKLMLVVP ISIALIALLL YFSFGSIKQV GLIMANVPLA LIGGVVALYV SGTYLSVPSS
IGFITLFGVA VLNGVVLVDS INQRRASGEA LYTSVYEGTV GRLRPVLMTA LTSALGLIPI
LLSSGVGSEI QKPLAVVIIG GLFSSTALTL LVLPTLYRWL YETKALKGDK ELEALD