Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3356 |
Symbol | |
ID | 4922197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4003102 |
End bp | 4006332 |
Gene Length | 3231 bp |
Protein Length | 1076 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640164968 |
Product | CzcA family heavy metal efflux protein |
Protein accession | YP_001095481 |
Protein GI | 127514284 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0717317 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000585076 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCTTCAGA AACTTATCGA TAGCGCGATA CGCAATCGGC TTCTGGTGGC CCTGGCGCTG CTGTGTGGTG TGGTAGCCAG TGTCGCCATG TTACCTAAGC TCAATCTCGA TGCCTTTCCC GATGTCACCA ATGTGCAGGT GACGGTCAAT ACCGCCGCCG AGGGGCTAGC GGCCGAGGAG GTGGAAAAGC TGATCAGCTA CCCGGTGGAG TCGGCCATGT ACGCCCTGCC ATCGGTGACC GAGGTGCGCT CCTTGTCACG CACCGGCCTC TCCATAGTGA CTGTGGTGTT TGCCGAAGGC ACAGATATCT ACTTTGCCCG TCAGCAGGTA TTCGAGCAGC TGCAGGCCGC CAGGGAGATG ATCCCTGACG GGGTGGGGGT GCCCGAGATA GGCCCCAACA CCTCAGGCCT GGGACAGATC TATCAGTACA TATTGCGGGC CACGCCTGAG TCCGGTATAG ATGCCGCCGA GCTAAGGAGC CTCAACGACT ATCTGGTGAA GCTCATCATG ATGCCGGTGG GGGGCGTGAC CGACGTGCTC TCTTTCGGCG GCGAGGTGCG TCAATATCAG GTGCAGATAG AGCCTAACAA GCTGCGCAGC TATGGCCTCT CCATGGCCCA GGTGACTCAG GCGCTGGAGA GCAACAACCG CAACGCAGGT GGCTGGTTTA TGGACCAGGG ACAGGAGCAG CTGGTGGTAC GTGGCTACGG CCTGTTACCG GCGGGTGAGG CTGGCCTGGC GGCGATCGCC CAGATCCCAC TCACAGAGGC AGGCGGTACG CCGGTGCGGG TGGCCGACAT TGCCAAGGTG GACTTTGGCG CCGAGATCCG TGTGGGCGCG GTCACCATGA CCCGCCGCGA CGATGCTGGA ACGCCAAAGG CGCTAGGCGA AGTGGTCGCC GGCGTGGTGC TCAAGCGTAT GGGGGCCAAC ACCAAGGCGA CCATCGACGA TATCTCGGCC CGCACCGCCA TGATAGAGCA GGCCCTGCCC AAGGGCGTCT CCTTCGAGGT GTTCTACGAT CAGGCGGATC TGGTGAACAA GGCGGTAGAG ACGGTGCGCG ATGCCCTCTT GATGGCCTTC CTGTTTATCG TGGTTATCCT GGCGCTCTTC CTGGTGAACC TGCGCGCGAC TTTGTTGGTG CTGCTCTCTA TCCCAGTCTC CATCGGCCTG GCCTTGATGG TGATGGCTTA CTTTGGCATG TCGGCCAACC TGATGTCCCT GGGTGGGCTG GCGGTGGCTA TCGGCATGCT GGTGGATGGC TCAGTGGTGA TGGTGGAGAA CATCTTCAAA CATCTGACCC AGCCGGACAG ACGCCATTTC GATCAGGCCA AGGCCCGCGC CTCGGGTGAG TCTGACCCCT ACCACGGCGA GGAAGATGGC CTGGGAGAAG GAGAGCGCAG CGGCATCGCC CTGAGGGTGA TGCTGGCGGC CAAGGAGGTG TGCAGCCCGA TCTTCTTCGC CACCGCCATC ATCATAGTGG TGTTTGCGCC GCTGTTTGCC CTGGAAGGGG TAGAGGGCAA GCTGTTCCAG CCCATGGCGG TGAGCATCAT TCTGGCCATG GTGGCGGCGC TGTTTGTGGC CCTGATCGGC GTGCCAGCTT TAGCTGTCTA TCTGTTCAAG CGCGGCGTGA CCCTGAGGGA GAGTCCGGTA CTCAAGCCGG TTGAGGCCCT GTATCGTCAC CTGCTTAGTG CCACCATGGG CAGGCCCAAG TTGGTGCTGC TGACGGCGGT GACCCTGTTC GGCATCAGCA TGGCGCTGCT GCCAAGGCTA GGTACCGAGT TTGTGCCCGA GCTCGAGGAG GGCACCATTA ACCTGAGGGT GACCCTGGCG CCAACCGCCA GCCTGAGCAC CTCATTGGAT GTGGCGCCCA AGCTCGAGGC CATGTTGATG ACTTTCCCCG AGGTCGACTA TGCCCTGAGC CGTATTGGTG CCCCGGAACT TGGCGGCGAT CCTGAGCCTG TGAGCAACAT AGAGATCTAT ATCGGCCTTA AGCCGATCGA GGAGTGGGAA CACGCCGAGA CCCGTCTCGA GCTGCAGCGC AAGATGGAAG AGAAGCTTAG CGTCTTCCCC GGCCTGCTAT TTACCTTCTC CCAGCCCATC GCCACCCGTG TCGATGAGTT GCTTTCAGGG GTGAAGGCCC AGCTGGCGAT CAAGCTGTTT GGCCCGGATC TCGAGGTGCT CTCCAGCAAG GGGCAGGAGC TCAGCGAGCT GGTGTCGGGT ATCGAGGGGG CGGTCGATGT CTCCCTGGAG CAGGTGTCCG GCGAGGCCCA GCTGGTGGTG CGTCCCAAGC GCGATCTGCT GGCCCGCTAT GGCATCAGCG TCGATGAGGT GATGAGCCTG GTGAGTCAGG GCATAGGCGG TGTCAGCGCC GGGCAGGTGA TCGACGGCAA CGCTAGATAC GACATCAATG TGCGTCTGGC CAGCCAATAT CGCAGCGCGC CCGATGCGCT GGAGGATCTG CTGCTCAGCG GCGTAAACGG TGCGACCGTG CGTCTAGGCG AGGTGGCCGA TGTGGTGGTC GAGATGGCGC CGCCTAATAT CCGCCGTGAC GATGTGCAAC GCCGGGTGGT GGTGCAGGCC AACGTGTCGG GGCGCGACAT GGGCTCAGTG GTGAAGGATA TCTACGCCAT AGTGCCTCAG GCGGATCTGC CGCCGGGTTA TACGGTCGTG GTCGGCGGTC AGTATGAGAA CCAGCAGCGG GCTCAGCAGA AGCTGATGTT GGTGGTGCCC ATCTCCATCG CCCTGATCGC CCTGCTGCTC TACTTCTCTT TTGGCTCCAT TAAGCAGGTG GGCCTGATCA TGGCCAACGT GCCGCTGGCG CTGATCGGCG GCGTGGTGGC CCTCTATGTC AGCGGCACCT ATCTGTCTGT GCCTAGCTCC ATCGGCTTTA TCACCCTGTT CGGGGTGGCA GTGCTCAATG GTGTGGTGTT GGTGGACTCG ATCAACCAGA GGCGCGCCTC GGGAGAAGCC CTCTACACCA GCGTGTATGA AGGCACTGTG GGACGCCTGC GCCCCGTGCT GATGACGGCG TTGACCTCGG CGCTGGGTTT GATCCCAATA CTCCTGTCTA GCGGTGTGGG CAGCGAGATC CAAAAGCCGC TGGCGGTGGT GATCATAGGC GGCCTGTTTA GCTCTACCGC CCTGACGCTG CTGGTGTTGC CGACCCTGTA TCGCTGGCTC TATGAGACCA AGGCGCTTAA AGGGGACAAG GAGTTGGAAG CCCTAGACTA G
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Protein sequence | MLQKLIDSAI RNRLLVALAL LCGVVASVAM LPKLNLDAFP DVTNVQVTVN TAAEGLAAEE VEKLISYPVE SAMYALPSVT EVRSLSRTGL SIVTVVFAEG TDIYFARQQV FEQLQAAREM IPDGVGVPEI GPNTSGLGQI YQYILRATPE SGIDAAELRS LNDYLVKLIM MPVGGVTDVL SFGGEVRQYQ VQIEPNKLRS YGLSMAQVTQ ALESNNRNAG GWFMDQGQEQ LVVRGYGLLP AGEAGLAAIA QIPLTEAGGT PVRVADIAKV DFGAEIRVGA VTMTRRDDAG TPKALGEVVA GVVLKRMGAN TKATIDDISA RTAMIEQALP KGVSFEVFYD QADLVNKAVE TVRDALLMAF LFIVVILALF LVNLRATLLV LLSIPVSIGL ALMVMAYFGM SANLMSLGGL AVAIGMLVDG SVVMVENIFK HLTQPDRRHF DQAKARASGE SDPYHGEEDG LGEGERSGIA LRVMLAAKEV CSPIFFATAI IIVVFAPLFA LEGVEGKLFQ PMAVSIILAM VAALFVALIG VPALAVYLFK RGVTLRESPV LKPVEALYRH LLSATMGRPK LVLLTAVTLF GISMALLPRL GTEFVPELEE GTINLRVTLA PTASLSTSLD VAPKLEAMLM TFPEVDYALS RIGAPELGGD PEPVSNIEIY IGLKPIEEWE HAETRLELQR KMEEKLSVFP GLLFTFSQPI ATRVDELLSG VKAQLAIKLF GPDLEVLSSK GQELSELVSG IEGAVDVSLE QVSGEAQLVV RPKRDLLARY GISVDEVMSL VSQGIGGVSA GQVIDGNARY DINVRLASQY RSAPDALEDL LLSGVNGATV RLGEVADVVV EMAPPNIRRD DVQRRVVVQA NVSGRDMGSV VKDIYAIVPQ ADLPPGYTVV VGGQYENQQR AQQKLMLVVP ISIALIALLL YFSFGSIKQV GLIMANVPLA LIGGVVALYV SGTYLSVPSS IGFITLFGVA VLNGVVLVDS INQRRASGEA LYTSVYEGTV GRLRPVLMTA LTSALGLIPI LLSSGVGSEI QKPLAVVIIG GLFSSTALTL LVLPTLYRWL YETKALKGDK ELEALD
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