| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3324 |
|---|
| Symbol | |
|---|
| ID | 4924034 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3963773 |
|---|
| End bp | 3964834 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640164936 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001095449 |
|---|
| Protein GI | 127514252 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1092] Predicted SAM-dependent methyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCG CTCACTCCAG CATACCACCG ATTAGGGATC ATAAGATCAT GTCGAACGCC
GACCTGCTGC GCCAGGCGAT CAGCCAAAGA ACCGAGCTAC TCGCCGCGGC ACAAGCCGCC
AACACAAACT GTTTTCGCGT GTTTCACGGC ACGGTCGAGG GGATAGACGG ACTCACCATA
GATCGCTATG GCGACGCCTG GCTGATCCAA TCGTTTCACC AGAGCCTGAC CCAAGAGGAG
CTTGAAAGCC TCGGCCAAGA GCTCAAGCAA ACTCAAGATC TTCCCATTAT CTACAATGAT
AGATCCAATA AAAACTCGCG TATTCTCAAC CCGCTGACGC CTGAACTCGA CGCCTTCGCC
AGCGCCGAGC AGGAGATGAC GGAAAATGGC ATCCGCTTCA TTAGTAAGTT ACGCCACGAA
GGGCAAGATC CCCTGCTGTT TCTCGACATG CGAATCGGCC GGGAATATGT GAAGGCCAAC
AGCCAAGGCA AATCTGTGCT GAACCTGTTT TCCTACACCT GCGGCATAGG CACAGCCGCT
GCTGTCGGCG GTGCAGAATC GGTCACCAAC GTCGACTTCT CCTCCTTTGC CCTGGCCGCC
GGACGTCGCA ACGCCGAACT CAATGGGGTA AGCGACAGGT GCGAGTTTAT TCAGAGCGAT
GCCTTTCCCG CCATGCGCCA ACTGGCGGGC ATGAAGGTAG GCGGACGTCG CAACCAGAAA
CTCCCCAGCT ATCCTAAGCT GGCGCCGCGT CAGTTCGACC TGGTGTTTCT AGACCCGCCG
CGTTTCGCCA AGAGCCCCTT CGGCACTGTG GATCTGATCA ACGACTACCA GAGCCTGTTC
AAACCCGCCA TGCTGGCCAC CAAGGCAGGC GGCACCATAG TCTGCTGCAA CAACGTCGCC
AAGGTAGAGC GTCAGGCATG GCTCGATGCC TTGATTCGCT GCGTCGAGAA GCAAGGGCGG
CAGGTCGCCA GCTTCGAGTG GATCCACTGC CACCAGGACT TCCCCTCCTT CGACGGCAAT
CATCCGCTTA AGATAGTGGC GCTCACCTTG GCAGATCAGT AA
|
|---|
| Protein sequence | MIRAHSSIPP IRDHKIMSNA DLLRQAISQR TELLAAAQAA NTNCFRVFHG TVEGIDGLTI
DRYGDAWLIQ SFHQSLTQEE LESLGQELKQ TQDLPIIYND RSNKNSRILN PLTPELDAFA
SAEQEMTENG IRFISKLRHE GQDPLLFLDM RIGREYVKAN SQGKSVLNLF SYTCGIGTAA
AVGGAESVTN VDFSSFALAA GRRNAELNGV SDRCEFIQSD AFPAMRQLAG MKVGGRRNQK
LPSYPKLAPR QFDLVFLDPP RFAKSPFGTV DLINDYQSLF KPAMLATKAG GTIVCCNNVA
KVERQAWLDA LIRCVEKQGR QVASFEWIHC HQDFPSFDGN HPLKIVALTL ADQ
|
|---|
| |