Gene Shew_3323 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3323 
Symbol 
ID4924033 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3963080 
End bp3963715 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content59% 
IMG OID640164935 
Productlipase-like 
Protein accessionYP_001095448 
Protein GI127514251 
COG category[R] General function prediction only 
COG ID[COG1075] Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTCG TGTTAGTCCA TGGGATCTTT AATACCGGCC AGGTGATGGG GTGGATGCGG 
CGTCAGTTTG AGCGTCAGGG CTATGAGTGC TTAACGCCTA CCCTGGCCCC CTTCGATGGC
AGGCATGGTA TCGCCTTTGC GGCCAAACAG CTGCAAAGCC ATATCGAGGC AGCCCTGGCC
GAGGATGAGA CCATCTGCCT CATCGGTTTT AGCATGGGCG GCATAGTTGC CCGTTACTAC
CTACAGCATT TGGGGGGCGA GAAACGCACC AAGGCGCTGT TTTCTATTTC TTCTCCCCAT
CATGGCAGCT ATCTCGCCTG GCTGCCCTAT CCGTCGCGGG CGATGCGTGA GCTGAGGCCA
AAGAGTCAGT TGTTGTCTCA GCTGGCCGCT TGCCAGGAGC GCCTGGAGGG GATCGCCCTC
TACTCGTTTC GCACGCCCAT CGATTTCACC ATAGTGCCGA GTCGCAGCTC CCATTGGCCG
GGGGCCGAGA ATAAGGTGAT CTGGCGACCG CTACATCTGT CGATGATCTT CAGTCGCCGC
GTAGTGGCAG AGATCCTAGC TGGGGTGGTG CAGCTGTCGC CGGGTGGTGA GACTGCGCCA
CAGACCGTGA AGGGCCTCCA GCGAGCAGAG GAGTAG
 
Protein sequence
MKLVLVHGIF NTGQVMGWMR RQFERQGYEC LTPTLAPFDG RHGIAFAAKQ LQSHIEAALA 
EDETICLIGF SMGGIVARYY LQHLGGEKRT KALFSISSPH HGSYLAWLPY PSRAMRELRP
KSQLLSQLAA CQERLEGIAL YSFRTPIDFT IVPSRSSHWP GAENKVIWRP LHLSMIFSRR
VVAEILAGVV QLSPGGETAP QTVKGLQRAE E