| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3306 |
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| Symbol | |
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| ID | 4923944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3948114 |
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| End bp | 3949091 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164918 |
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| Product | KpsF/GutQ family protein |
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| Protein accession | YP_001095431 |
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| Protein GI | 127514234 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[T] Signal transduction mechanisms |
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| COG ID | [COG0794] Predicted sugar phosphate isomerase involved in capsule formation
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
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| TIGRFAM ID | [TIGR00393] KpsF/GutQ family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.57065 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAGATG CAGATCAATT ACGTCAATGG GGACGCAAGG TTATCGATAC CGAGCGCAAC
GCGCTGGACA ACCTGTATCA ATATGTCGAC TCGAGTGAAT TTGCCAAGGC CTGCCAACTG
ATCCTCGCCT GCACCGGCAA GGTGATCGTG ATGGGCATGG GCAAATCCGG CCACATAGGT
AACAAGATCT CGGCCACCCT GGCCAGCACA GGCACCCCAG CCTTCTTCGT CCACCCCGGC
GAGGCCAGCC ATGGCGACCT GGGCGTACTG AGCGAGAACG ATATCGTACT CGCCATCTCC
AACTCGGGCG AGGCCAGCGA AATTTTAACC CTGATGCCTG TGATCAAGCG TATGGGGCTG
CCCGTCATCG CGGTGACGGG CAAGCCTGAG TCCAACATGG CCAAGCATTC GGTCGTTCAT
CTGTGTATCG AGGTACCGGA AGAAGCCTGC CCGCTCGGAC TGGCGCCCAC TTCGAGCACC
ACGGCGACAC TCGTCATGGG CGATGCCCTG GCGGTGGCCC TGCTGCAGGC CAGAGGCTTC
ACCAAAGATG ATTTCGCCCT CTCCCACCCC GGTGGCAGCC TGGGACGCAA GCTGCTGCTC
AAGGTGAGCG ACGTGATGCA CAAGGGTGAC GACTTGCCTC TGGTGGCAGA AGATATCTGC
ATCACTGAGG CCCTATATGA GATCTCCAAG AAGGGGCTCG GCATGACAGG CGTAGTCAAC
AGCCAGGGCA TGCTGGTGGG TATCTTCACC GACGGCGACC TGCGCCGGGT GATCGACGCC
GAGATCAACC TGCGCAAGAC CTCCATCTCA GAGGTAATGA CCCATGGCTG CGTCACCGTT
AGCGAAGGCA TCTTAGCCGC CCAGGCCCTC AAGGTGATGG ACGAGAAGGA GATCAACGGC
CTGATTGTCA CCGACGAGCA GCAGAAGCCG ATTGGTGCGC TCAATATGCT GGACATGGTC
AAGGCGGGGG TGATCTAA
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| Protein sequence | MVDADQLRQW GRKVIDTERN ALDNLYQYVD SSEFAKACQL ILACTGKVIV MGMGKSGHIG
NKISATLAST GTPAFFVHPG EASHGDLGVL SENDIVLAIS NSGEASEILT LMPVIKRMGL
PVIAVTGKPE SNMAKHSVVH LCIEVPEEAC PLGLAPTSST TATLVMGDAL AVALLQARGF
TKDDFALSHP GGSLGRKLLL KVSDVMHKGD DLPLVAEDIC ITEALYEISK KGLGMTGVVN
SQGMLVGIFT DGDLRRVIDA EINLRKTSIS EVMTHGCVTV SEGILAAQAL KVMDEKEING
LIVTDEQQKP IGALNMLDMV KAGVI
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