Gene Shew_3304 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3304 
Symbol 
ID4923942 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3946077 
End bp3946955 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content59% 
IMG OID640164916 
ProductABC transporter-related protein 
Protein accessionYP_001095429 
Protein GI127514232 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1127] ABC-type transport system involved in resistance to organic solvents, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.236895 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCATC AATCGTTAAG TCATGACAGC CAAGCCAAGG GTGAGACTAA GCCGATGGAA 
CAAGCGCCGA TGGAACACGT GCAGCCATTG GTGGAGATTA GCCATCTGGG CTTCAGTCGT
GGCACCCATG TTATCTATGA CGACGTCAGT CTCACCATCC CCAGGGGGAA GGTGACCGCC
ATCATGGGAC CCAGTGGCAT AGGCAAGACC ACCCTACTCA AGCTGATCGG TGGTCAGCTG
CGGCCGGACT CAGGGGTCAT CAAGGTCGAT GGCGTTGACG TGCATAAATG CAATCGCAGC
GAGCTGTTTG CCCTGCGCAA ACGCATGAGT ATGCTGTTTC AGAGCGGCGC CCTGTTTACC
GACATGAATG TGTTCGACAA CGTCGCCTTC GCCCTGCGGG AACACTCGGA CCTGCCCGAG
GCGATCATTC GCCGCATCGT ACTGATGAAG CTCGAAGCCG TGGGGCTCAG AGGCGCGGCG
CAGATGATGC CGAGCGAGCT CTCCGGCGGT ATGCAGAGAC GTGCGGCCCT GGCCCGCGCC
ATCGCCCTGG AGCCAGAGTT GGTGCTCTAT GATGAGCCCT TCGCCGGACA GGACCCCATC
TCCATGGGGG TGCTGGTGAA GCTGATCCGT GAGCTGAGTG ATGCGCTGAG CCTCACCTCT
GTGGTGGTGT CCCATGACGT GCAAGAGGTG CTGGGGATCG CCGACTATGT CTATGTGCTG
GCCGACAAGA AGGTGATCGC CCACGGCACG CCTGCCGAAC TGAAGGCGGC AGACAACCCT
AAGTTGAAAC AGTTTATCGG CGGCGAGCCC GACGGGCCCG TGCCATTTCA TTTTCCCGCC
CAGGATTACC AGAAGGAGAT GTTAGGTGAG CGTGATTGA
 
Protein sequence
MSHQSLSHDS QAKGETKPME QAPMEHVQPL VEISHLGFSR GTHVIYDDVS LTIPRGKVTA 
IMGPSGIGKT TLLKLIGGQL RPDSGVIKVD GVDVHKCNRS ELFALRKRMS MLFQSGALFT
DMNVFDNVAF ALREHSDLPE AIIRRIVLMK LEAVGLRGAA QMMPSELSGG MQRRAALARA
IALEPELVLY DEPFAGQDPI SMGVLVKLIR ELSDALSLTS VVVSHDVQEV LGIADYVYVL
ADKKVIAHGT PAELKAADNP KLKQFIGGEP DGPVPFHFPA QDYQKEMLGE RD