Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3304 |
Symbol | |
ID | 4923942 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3946077 |
End bp | 3946955 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640164916 |
Product | ABC transporter-related protein |
Protein accession | YP_001095429 |
Protein GI | 127514232 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1127] ABC-type transport system involved in resistance to organic solvents, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.236895 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCATC AATCGTTAAG TCATGACAGC CAAGCCAAGG GTGAGACTAA GCCGATGGAA CAAGCGCCGA TGGAACACGT GCAGCCATTG GTGGAGATTA GCCATCTGGG CTTCAGTCGT GGCACCCATG TTATCTATGA CGACGTCAGT CTCACCATCC CCAGGGGGAA GGTGACCGCC ATCATGGGAC CCAGTGGCAT AGGCAAGACC ACCCTACTCA AGCTGATCGG TGGTCAGCTG CGGCCGGACT CAGGGGTCAT CAAGGTCGAT GGCGTTGACG TGCATAAATG CAATCGCAGC GAGCTGTTTG CCCTGCGCAA ACGCATGAGT ATGCTGTTTC AGAGCGGCGC CCTGTTTACC GACATGAATG TGTTCGACAA CGTCGCCTTC GCCCTGCGGG AACACTCGGA CCTGCCCGAG GCGATCATTC GCCGCATCGT ACTGATGAAG CTCGAAGCCG TGGGGCTCAG AGGCGCGGCG CAGATGATGC CGAGCGAGCT CTCCGGCGGT ATGCAGAGAC GTGCGGCCCT GGCCCGCGCC ATCGCCCTGG AGCCAGAGTT GGTGCTCTAT GATGAGCCCT TCGCCGGACA GGACCCCATC TCCATGGGGG TGCTGGTGAA GCTGATCCGT GAGCTGAGTG ATGCGCTGAG CCTCACCTCT GTGGTGGTGT CCCATGACGT GCAAGAGGTG CTGGGGATCG CCGACTATGT CTATGTGCTG GCCGACAAGA AGGTGATCGC CCACGGCACG CCTGCCGAAC TGAAGGCGGC AGACAACCCT AAGTTGAAAC AGTTTATCGG CGGCGAGCCC GACGGGCCCG TGCCATTTCA TTTTCCCGCC CAGGATTACC AGAAGGAGAT GTTAGGTGAG CGTGATTGA
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Protein sequence | MSHQSLSHDS QAKGETKPME QAPMEHVQPL VEISHLGFSR GTHVIYDDVS LTIPRGKVTA IMGPSGIGKT TLLKLIGGQL RPDSGVIKVD GVDVHKCNRS ELFALRKRMS MLFQSGALFT DMNVFDNVAF ALREHSDLPE AIIRRIVLMK LEAVGLRGAA QMMPSELSGG MQRRAALARA IALEPELVLY DEPFAGQDPI SMGVLVKLIR ELSDALSLTS VVVSHDVQEV LGIADYVYVL ADKKVIAHGT PAELKAADNP KLKQFIGGEP DGPVPFHFPA QDYQKEMLGE RD
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