Gene Shew_3260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3260 
Symbol 
ID4921337 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3898387 
End bp3899415 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content46% 
IMG OID640164872 
Productporin 
Protein accessionYP_001095385 
Protein GI127514188 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000138522 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0127606 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAT CTCTAATCTC TGCATCAGTA GCATCTGTTA TTGCACTGAC CTCATTCGGC 
GCGCTAGCCG ATGGCCCTAA CTTCTACGGT CGTTTAGACC TTTCTGTGAC TAACTCTGAC
AAGGGTTACA CCACTCAAAA CAGTAAAGAA GGTACTGTTC TAGAGAACAA CTTCTCTAAC
CTAGGTGTGA AAGGTTCTGA AAAGATTTCT GACGGTATCG ATGTTATCTA CCAAATGGAA
TTCCAGGTTG AAAACACTAC CCAAACTAAA GACAAGAGCG GCGACGACGT TGTCTTTAAA
GCACGTAACA CATTCCTAGG TCTTAAGAGC GCAGCTGGTA CTGTTCTTGT TGGTCGTAAC
GACACAGTAT TCAAGCAATC TGAAGGTGGC ATCGACCTAT TCGGTAACAC CAACGCCGAT
ATCGACCGTC TGGTAGGCGC GCAAACTCGT AGCGCCGACG GTATCTGGTA CTACTCTCCA
AAGATCGCCG ACCTGATCAC TGTAAACGCA ACCTATCTTG TAGAAGATAA CCAGAGTTCA
GATGATAGCC AATATGCATT AAGCGCGACT CTGGGTGACA AGAAGTTCAA GGCACAAAAC
TACTATGTAG CAGTAGCTTA CAACAAAGGC ATCTCTGGTA TCGACGCATA CCGTGGTGTT
GCTCAAGTTA AGCTAGGCGA CTTCAAAGTT GGCGGTCTAT TCCAAAACTC TGAAAGCATC
GTTGACGGTT CAGAAGACAA CAACACTTAC ATCGTGAACG TTGCCTACAA CCTGAACGGC
GTTAACCTGA AGGCTGAGTA CGGTAAAGAC GAAGCTGGCT TCGGTAGATA CTACAGCAAA
GCTAAAGGTG TAGCAGGTAC TGACATCAAC GTGACTAACA TCACTGTGGG TGCTGACTAC
CGCGTAGCTA AATCAACTCT GATCTACGGT CACTATGCAA TGTACGAAGG CGACCACAAA
GTTGCTGGCA TGAAAGTTGA CCTAGAAGAC GACAACATCT TCACCGTTGG TGTTCGTTAC
GACTTCTAA
 
Protein sequence
MKKSLISASV ASVIALTSFG ALADGPNFYG RLDLSVTNSD KGYTTQNSKE GTVLENNFSN 
LGVKGSEKIS DGIDVIYQME FQVENTTQTK DKSGDDVVFK ARNTFLGLKS AAGTVLVGRN
DTVFKQSEGG IDLFGNTNAD IDRLVGAQTR SADGIWYYSP KIADLITVNA TYLVEDNQSS
DDSQYALSAT LGDKKFKAQN YYVAVAYNKG ISGIDAYRGV AQVKLGDFKV GGLFQNSESI
VDGSEDNNTY IVNVAYNLNG VNLKAEYGKD EAGFGRYYSK AKGVAGTDIN VTNITVGADY
RVAKSTLIYG HYAMYEGDHK VAGMKVDLED DNIFTVGVRY DF